Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F22
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 149 3e-37
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 147 8e-37
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 29 0.58
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 26 3.1
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 5.4
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 25 7.1
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 9.4
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 9.4
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 25 9.4
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 149 bits (360), Expect = 3e-37
Identities = 68/131 (51%), Positives = 92/131 (70%)
Frame = +2
Query: 53 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 232
V+VKDV+ K + AA LK++GK+ P+ +D+VKT KELAPYDPDW+YVR AAI RH
Sbjct: 4 VSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARH 63
Query: 233 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 412
IY+R VGV + K++GG G+ PSH SGS+ RK +QSLE + ++EK +GGR +
Sbjct: 64 IYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRI 123
Query: 413 TTQXRRXLDRI 445
+ Q +R LDRI
Sbjct: 124 SQQGQRDLDRI 134
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 147 bits (357), Expect = 8e-37
Identities = 67/131 (51%), Positives = 92/131 (70%)
Frame = +2
Query: 53 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 232
V+VKDV+ + + AA LK++GK+ P+ +D+VKT KELAPYDPDW+YVR AAI RH
Sbjct: 4 VSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARH 63
Query: 233 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 412
IY+R VGV + K++GG G+ PSH SGS+ RK +QSLE + ++EK +GGR +
Sbjct: 64 IYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRI 123
Query: 413 TTQXRRXLDRI 445
+ Q +R LDRI
Sbjct: 124 SQQGQRDLDRI 134
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 28.7 bits (61), Expect = 0.58
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 29 QHKARCVPVTVKDV-EQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 163
QH R VP+ + + E I K AA+ T +K PE +DL+ A
Sbjct: 795 QHGCRAVPLDGRVLCEPTTISKATAANYIMTHLIKNPEELDLILVA 840
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 283 TEDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 173
++D+G +L+ N+ +N+ TK+ S I+ QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 159 QLASKSWLRMTLIGSMCVVL 218
+L SKSWL + +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 50 PVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKE 175
P +D E DKI ++V HL K K + + L K KE
Sbjct: 81 PYDHEDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKE 122
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 207 CVVLPSFVIFTFAHLLESRL 266
C+V S V+F AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = -2
Query: 433 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 341
VSS C E T L+ +N ++C+ LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 219 PSFVIFTFAHLLESRLSPRSSVGANVMELHLHISAGHQAVLHARLCNRW 365
P I TF+ + + + G +V +L+L + + H L +R C +W
Sbjct: 261 PCLYIETFSFPISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQW 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,834
Number of Sequences: 5004
Number of extensions: 37857
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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