Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F22
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   150   5e-37
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   150   5e-37
Z70680-4|CAA94569.1|  274|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AF000197-4|AAB52899.1|  274|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  150 bits (364), Expect = 5e-37
 Identities = 73/131 (55%), Positives = 93/131 (70%), Gaps = 1/131 (0%)
 Frame = +2

Query: 56  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 235
           ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+
Sbjct: 6   SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHL 65

Query: 236 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRIL 412
           Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL
Sbjct: 66  YFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRIL 124

Query: 413 TTQXRRXLDRI 445
           + Q R+ LDRI
Sbjct: 125 SKQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  150 bits (364), Expect = 5e-37
 Identities = 73/131 (55%), Positives = 93/131 (70%), Gaps = 1/131 (0%)
 Frame = +2

Query: 56  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 235
           ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ RH+
Sbjct: 6   SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHL 65

Query: 236 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRIL 412
           Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG GRIL
Sbjct: 66  YFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRIL 124

Query: 413 TTQXRRXLDRI 445
           + Q R+ LDRI
Sbjct: 125 SKQGRKDLDRI 135


>Z70680-4|CAA94569.1|  274|Caenorhabditis elegans Hypothetical
           protein C25G4.6 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 47  VPVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTAR 166
           +PV+ KDV +D +VK +    K T  V+ P+ +D  + A+
Sbjct: 161 IPVSDKDVARDLLVKNIQEKGKVTFVVERPDSIDAKQWAK 200


>AF000197-4|AAB52899.1|  274|Caenorhabditis elegans Hypothetical
           protein T21G5.4 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 47  VPVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTAR 166
           +PV+ KDV +D +VK +    K T  V+ P+ +D  + A+
Sbjct: 161 IPVSDKDVARDLLVKNIQEKGKVTFVVERPDSIDAKQWAK 200


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +2

Query: 239 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTT 418
           I S +  K  T ++ G  R G  P      SGS  +K   +  A+K  EK +D GR L  
Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKLKK 199

Query: 419 QXRRXLDRI 445
              + + ++
Sbjct: 200 TVSKTITKL 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,651,918
Number of Sequences: 27780
Number of extensions: 230180
Number of successful extensions: 607
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)