Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F22
(533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 152 1e-37
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 151 2e-37
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 150 7e-37
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 30 0.84
At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 1.5
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 29 1.9
At5g16500.1 68418.m01928 protein kinase family protein contains ... 27 5.9
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 152 bits (369), Expect = 1e-37
Identities = 68/130 (52%), Positives = 91/130 (70%)
Frame = +2
Query: 56 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 235
TVKDV VK A+HLK++GK+++P D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65
Query: 236 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 415
Y+R +GV +I+GG KRNG P HFC+SSG IAR LQ LE + +VE GGR +T
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRIT 125
Query: 416 TQXRRXLDRI 445
+ +R LD++
Sbjct: 126 SSGQRDLDQV 135
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 151 bits (367), Expect = 2e-37
Identities = 66/130 (50%), Positives = 91/130 (70%)
Frame = +2
Query: 56 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 235
TVKDV VK A+HLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 236 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 415
Y+R +GV +I+GG KRNG P HFC+SSG IAR LQ LE + +VE GGR +T
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRIT 125
Query: 416 TQXRRXLDRI 445
+ +R LD++
Sbjct: 126 SSGQRDLDQV 135
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 150 bits (363), Expect = 7e-37
Identities = 64/130 (49%), Positives = 92/130 (70%)
Frame = +2
Query: 56 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 235
TVKDV + VK AAHLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 236 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 415
Y+R +GV +I+GG KRNG P HFC+SSG +AR LQ L+ + +V+ GGR +T
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKIT 125
Query: 416 TQXRRXLDRI 445
+ +R LD++
Sbjct: 126 SSGQRDLDQV 135
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 30.3 bits (65), Expect = 0.84
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 317 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQXRRXLDRI 445
FCRSSG A + + ++ + + K +DG ++L RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 401 HRPELSQQASMPPTIAKPCVQYCLM 327
H P L Q PP + C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 101 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 247
+H + V P D + T F+ ++ ++ WF C+A++ H+ + S
Sbjct: 15 SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +2
Query: 35 KARCVPVTVKD-----VEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 181
K+R P T + VE D+ V A K+T + + E VKT F+ELA
Sbjct: 15 KSRNAPCTTNETNDDNVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,910,381
Number of Sequences: 28952
Number of extensions: 209625
Number of successful extensions: 479
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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