Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F21
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0533 + 3942813-3943164,3943244-3943458                           28   4.6  
12_01_0382 + 2995263-2995673                                           27   6.1  

>07_01_0533 + 3942813-3943164,3943244-3943458
          Length = 188

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 332 AVPKSTDSGSGGSEMTPC*PTT 397
           AVP  T +G+GGS+ TP   TT
Sbjct: 136 AVPSETPAGTGGSKATPTTATT 157


>12_01_0382 + 2995263-2995673
          Length = 136

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 323 PVLAVPKSTDSGS-GGSEMTPC*P 391
           PVL+ PK T SGS GGS  +P  P
Sbjct: 69  PVLSPPKGTGSGSVGGSSSSPSAP 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,549,219
Number of Sequences: 37544
Number of extensions: 213685
Number of successful extensions: 420
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)