Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F21
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.76 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 332 QALVTVLVETSSLGE*INPQTQPTEF 255
           +++ TVL  T+ LG  I P TQ  +F
Sbjct: 296 ESVETVLTVTAPLGAEIEPSTQTIDF 321


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 203 AESTTGSETRPTEKIRRETQ 262
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 463 EVTPSVDTKQFKLCKSLRFKTLRC 392
           E+  S+DT+  ++C+S R     C
Sbjct: 333 EIRESLDTQFLQVCRSRRHSDSCC 356


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 306 FDKNGDQCLRY 338
           FDKNGD   RY
Sbjct: 530 FDKNGDGPARY 540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,904
Number of Sequences: 438
Number of extensions: 2435
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)