Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F21
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63430.1 68416.m07142 expressed protein similarity to predict...    28   2.9  
At1g29395.1 68414.m03595 stress-responsive protein, putative sim...    27   5.1  
At4g27600.1 68417.m03966 pfkB-type carbohydrate kinase family pr...    27   9.0  

>At3g63430.1 68416.m07142 expressed protein similarity to predicted
           protein, Arabidopsis thaliana
          Length = 540

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 289 SPRLEVSTRTVTSACGT*KHR*WIRRIRNDAVLAHN 396
           +PRL + +R V  A G  KH    R+IR DAV A N
Sbjct: 87  APRLSLDSRAVVDAKGCLKH----RQIRADAVEAEN 118


>At1g29395.1 68414.m03595 stress-responsive protein, putative
           similar to cold acclimation WCOR413-like protein gamma
           form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar
           to stress-regulated protein SAP1 [Xerophyta viscosa]
           gi|21360378|gb|AAM47505
          Length = 225

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -2

Query: 328 HWSPFLS-KPRASASKLTH--RH-SPLSFSPDLLSGSRFRS 218
           H  PFLS K R+  S L+   RH SP+ F+P  LSG R R+
Sbjct: 16  HQKPFLSLKLRSRPSDLSGLGRHTSPVCFNPLRLSGDRQRT 56


>At4g27600.1 68417.m03966 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 471

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 376 HFGSS*STIGAFRYRKHWSPFLS 308
           HF +  S I A RY  H+ PF+S
Sbjct: 349 HFSAEESPISATRYMSHFVPFVS 371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,387,577
Number of Sequences: 28952
Number of extensions: 171037
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)