Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F18
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    65   4e-12
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    64   1e-11
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    29   0.38 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.2  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   2.7  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   6.2  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   6.2  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   6.2  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   8.2  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   8.2  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   8.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   8.2  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 65.3 bits (152), Expect = 4e-12
 Identities = 30/64 (46%), Positives = 46/64 (71%)
 Frame = +1

Query: 160 LFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRRALIELREKGLIKQVVQHHGQVI 339
           +FDK    ++ KEVP +K I+ +V+ +R+K+ GSL R A+ +L E+G+I++V QH  Q I
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80

Query: 340 YTRA 351
           YTRA
Sbjct: 81  YTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 29/63 (46%), Positives = 45/63 (71%)
 Frame = +1

Query: 160 LFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRRALIELREKGLIKQVVQHHGQVI 339
           +FDK    ++ KEVP +K I+ +V+ +R+K+ GSL R A+ +L E+G+I++V QH  Q I
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80

Query: 340 YTR 348
           YTR
Sbjct: 81  YTR 83


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 181 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 68
           +M  YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 62  KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 160
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 416 VFFVFIFLTYIIVYATGSSPLVARV*ITCPWCWTTCLMRP 297
           + F  IF    I+Y T ++P++  + +T   CW   L  P
Sbjct: 251 ILFQIIFTP--ILYKTNNNPIILPITVTVCSCWWLILSTP 288


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 188  SXSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 90
            S  Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 3   LSNFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEE 116
           L N K+     + G    A K  EEE ++ W QS+E E
Sbjct: 278 LINTKNVLGNKKTGVSYLAKK--EEEYKLLWEQSRETE 313


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 235 SERLKVRGSLXRRALIELREKGLIKQVVQHHGQVIY 342
           +ERL +  ++ R AL+EL++  LIKQ      QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 167 SNNTWLFNLSRTFPLDHFFFLAL 99
           S N+W+F L  TF     F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 109 SWLCRHRILPSSSVFFEAVW 50
           +WL +  ++PSSS F  + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 287  SSMSALLXREPRTFNLSDTTAGVISLYCGTSLYSXSYVGLSNNT--WLFNLSRTFP 126
            S+ S  L  EP+TF+ S T +  IS     SL       LS++T   L + S T P
Sbjct: 946  SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIP 1001


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 241  RLKVRGSLXRRALIELREKGLIKQVVQHHGQVIYTRATKGDD 366
            R   RG++  R +I  +EK  +++VV   G+   TR TK  D
Sbjct: 1551 RFITRGTIEERIVIRAKEKEEVQKVVISGGE---TRPTKQMD 1589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,629
Number of Sequences: 5004
Number of extensions: 32587
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)