Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F18
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)              131   3e-31
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.38 
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    28   2.7  
SB_34145| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)                 28   3.6  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_58990| Best HMM Match : SH3_1 (HMM E-Value=1.7e-14)                 27   8.2  
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)                 27   8.2  
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score =  131 bits (316), Expect = 3e-31
 Identities = 67/115 (58%), Positives = 76/115 (66%)
 Frame = +1

Query: 22  PPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYXKLYKEV 201
           PPKKD K  AK+PQ                           LNN VLFDK TY KLYKEV
Sbjct: 1   PPKKDPKKDAKKPQKAQKPAGSGGGKAKKKKWSKGKVRDK-LNNLVLFDKATYDKLYKEV 59

Query: 202 PQYKLITPAVVSERLKVRGSLXRRALIELREKGLIKQVVQHHGQVIYTRATKGDD 366
           P Y+LITP+VVSERLK+RGSL RRAL+EL+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 60  PSYRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -3

Query: 326  WCWTTCLMRPFSLSSMSALLXREPRTFNLSDTTAGVISLYCGTSLYSXSYVGLSNNTWLF 147
            WC     +RPF LSS++  L R      +  ++ GV     GT     S  G++   W  
Sbjct: 2144 WCGPVYFVRPFCLSSIAYRLIRA-----IMSSSLGVACSPVGTKAPGVSSGGITRTIWSA 2198

Query: 146  NLSRTFPL 123
            + +R  P+
Sbjct: 2199 SRTREMPV 2206


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 200 TSLYSXSYVGLSNNTWLFNLSRTFPLDH 117
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_34145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 405 FYFFNLYHSLCDWIIALGRTRV 340
           FY+F++    CDW  A  R RV
Sbjct: 289 FYWFSMQQRRCDWFAAKSRQRV 310


>SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)
          Length = 191

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 4   FPTSKMPPKKDAKASAKQPQ 63
           F  SKMP KK AKA+  QP+
Sbjct: 47  FAISKMPSKKGAKAAEAQPE 66


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 53  NSLKKHRRRRKDPVAAKPRRRSGPK 127
           N   KH  ++K PV   P+R  GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328


>SB_58990| Best HMM Match : SH3_1 (HMM E-Value=1.7e-14)
          Length = 167

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -3

Query: 293 SLSSMSALLXREPRTFNLSDTTAGVISLYCGT-SLYSXSYVGLSNNTWLFNLSRTFPLDH 117
           +L+   +L  RE     L +  +  I  +    S++  +Y GL  N W       +PL H
Sbjct: 100 TLTKNISLFSREIEVTTLKEHISCAIKCFVIVMSMFLPNYAGLRRNLWFTRKKPNYPLPH 159


>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
          Length = 683

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 155 WLFNLSRTFPLDHFFFLALPPPDPSFFFC--VF*GCLAEAFASF 30
           WL   + TFPL  +  + + P DP  ++C  +F G    +F S+
Sbjct: 154 WLAATAITFPLFMYSKMVMSPFDPDTYWCFVLFPGDSLSSFPSY 197


>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 206  CGTSLYSXSYVGLSNNTWLFNLSRTFP 126
            CG   +  +Y GL  N W+  ++R  P
Sbjct: 1248 CGKRTFMPNYAGLRGNLWITRITRKKP 1274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,735,747
Number of Sequences: 59808
Number of extensions: 257801
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)