Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F18
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   110   5e-25
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   1.0  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   7.2  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   7.2  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   7.2  
AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical...    26   9.5  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   9.5  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    26   9.5  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    26   9.5  
AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore ...    26   9.5  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    26   9.5  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  110 bits (264), Expect = 5e-25
 Identities = 61/118 (51%), Positives = 68/118 (57%)
 Frame = +1

Query: 19  MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYXKLYKE 198
           MPPKKD K     P                            LNN VLFD+ TY KLYKE
Sbjct: 1   MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKLYKE 57

Query: 199 VPQYKLITPAVVSERLKVRGSLXRRALIELREKGLIKQVVQHHGQVIYTRATKGDDPV 372
           V  YKLITP+VVSERLKVR SL +  L EL+ KGL+K VV HHGQV+YTRATK  D +
Sbjct: 58  VITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEADVI 115


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 30  EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 131
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 244 LKVRGSLXRRALIELREKGLIKQVVQHHGQVIYTR 348
           L V+GS+ + A +ELR   +  Q +  H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 71  RRRRKDPVAAKPRRRSGP 124
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 71  RRRRKDPVAAKPRRRSGP 124
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 284 SMSALLXREPRTFNLSDTTAGVISLYCG 201
           S++  +  E   F+LSDT   ++ L+CG
Sbjct: 2   SVNRTISLENGKFDLSDTIVNIVELFCG 29


>AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical
           protein Y57A10A.28 protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 323 CWTTCLMRPFSLSSMSALLXREP 255
           CW +C++  F+ S +S  L  EP
Sbjct: 62  CWLSCMLMSFAGSFLSCFLLGEP 84


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 73  SVFFEAVWPKPSR 35
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
 Frame = -1

Query: 169 YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 83
           YQ    CS    TC   F W     W CR R++
Sbjct: 365 YQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts homolog)
            family protein 6 protein.
          Length = 1186

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 414  LFCFYFFNL-YHSLCDWIIALGRTRVDHLPMVLD 316
            L C  FF+  YHS+CD        R+ H+  V+D
Sbjct: 1067 LACRTFFSTHYHSICDSFTNHPNVRLAHMKCVVD 1100


>AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform a protein.
          Length = 411

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 293 SLSSMSALLXREPRTFNLSDTTAGVISLYCGTSLYSXSYVGLSNNT 156
           S++S+ AL   +    NL  TTA  + LY   S    S + + NN+
Sbjct: 313 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform b protein.
          Length = 1090

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 293 SLSSMSALLXREPRTFNLSDTTAGVISLYCGTSLYSXSYVGLSNNT 156
           S++S+ AL   +    NL  TTA  + LY   S    S + + NN+
Sbjct: 228 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,376,725
Number of Sequences: 27780
Number of extensions: 190773
Number of successful extensions: 542
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)