Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F18
         (418 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34555.1 68417.m04910 40S ribosomal protein S25, putative           90   6e-19
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo...    88   2e-18
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)            88   2e-18
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            81   2e-16
At4g27630.1 68417.m03971 expressed protein                             29   1.3  
At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT) id...    27   3.8  
At5g16810.1 68418.m01969 expressed protein                             27   5.1  
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri...    27   6.7  
At1g48180.1 68414.m05378 expressed protein ; expression supporte...    27   6.7  
At1g24706.1 68414.m03104 expressed protein                             27   6.7  
At5g64950.1 68418.m08170 mitochondrial transcription termination...    26   8.9  

>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
          Length = 108

 Score = 89.8 bits (213), Expect = 6e-19
 Identities = 41/72 (56%), Positives = 53/72 (73%)
 Frame = +1

Query: 145 LNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRRALIELREKGLIKQVVQH 324
           +NN VLFD+ TY KL  E P++KLITP+++S+RL++ GSL RRA+ EL  KG I+ V  H
Sbjct: 37  VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAH 96

Query: 325 HGQVIYTRATKG 360
             Q IYTRAT G
Sbjct: 97  SSQQIYTRATHG 108


>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
           ribosomal protein S25, Lycopersicon esculentum,
           PIR2:S40089
          Length = 108

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 39/70 (55%), Positives = 53/70 (75%)
 Frame = +1

Query: 145 LNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRRALIELREKGLIKQVVQH 324
           +NN VLFD+ TY KL  E P++KLITP+++S+R+++ GSL RRA+ EL  KG+I+ V  H
Sbjct: 37  VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96

Query: 325 HGQVIYTRAT 354
             Q IYTRAT
Sbjct: 97  SSQQIYTRAT 106


>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
          Length = 108

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 40/70 (57%), Positives = 53/70 (75%)
 Frame = +1

Query: 145 LNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRRALIELREKGLIKQVVQH 324
           +NN VLFD+ TY KL  E P++KLITP+++S+R+++ GSL RRA+ EL  KGLI+ V  H
Sbjct: 37  VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96

Query: 325 HGQVIYTRAT 354
             Q IYTRAT
Sbjct: 97  SSQQIYTRAT 106


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 37/70 (52%), Positives = 51/70 (72%)
 Frame = +1

Query: 145 LNNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVRGSLXRRALIELREKGLIKQVVQH 324
           +NN VLFD+ TY KL  E P++KLITP+++S+RL++ GSL R+A+ +L  KG I+ V  H
Sbjct: 53  VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTH 112

Query: 325 HGQVIYTRAT 354
             Q I TRAT
Sbjct: 113 SSQQINTRAT 122


>At4g27630.1 68417.m03971 expressed protein
          Length = 348

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 338 ITCPWCWTTCLMRPFSLSSMSALLXREPRTFNLSDTTAGVISLYCGTSLYSXSYVGL 168
           I  P CWTT L  PF L    ++     R   +  T   V+S +   +L   SY+ L
Sbjct: 4   ILSPTCWTTLLKHPFILKGFFSMPQLVSRIGVIGVTLMAVLSGFGAVNL-PYSYISL 59


>At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT)
           identical to SP|Q9LDH0
          Length = 534

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 405 FYFFNLYHSLCDWIIALGRTRVDHLP 328
           F + NL+H++ DW  A   +RV  LP
Sbjct: 244 FEYANLFHTVTDWYSAYVSSRVTGLP 269


>At5g16810.1 68418.m01969 expressed protein 
          Length = 418

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 12  FKDAAQEGREGFGQTAS-KNTEEEGRIRWRQSQEEEVVQRK 131
           F+D  ++    + QTAS K T    +  W   ++E++++R+
Sbjct: 181 FRDGGKDSAADYAQTASEKTTRARSQGVWNPYEKEQMIKRR 221


>At2g17250.1 68415.m01992 expressed protein weak similarity to
           Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
           [Saccharomyces cerevisiae]
          Length = 577

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 148 NNQVLFDKPTYXKLYKEVPQYKLITPAVVSERLKVR 255
           +++ + +KPT  K   E     L++PA +S+R+K++
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLK 280


>At1g48180.1 68414.m05378 expressed protein ; expression supported
           by MPSS
          Length = 239

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 242 LSDTTAGVISLYCGTSLYSXSYVGL 168
           L    + +  +YCGTS    SYVGL
Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 146  NLSRTFPLDHFFFLALPPPDP 84
            +L ++ P DHF    LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582


>At5g64950.1 68418.m08170 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 391

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 287 SSMSALLXREPRTFNLSD 234
           S +++LL R+PR FNLS+
Sbjct: 196 SQLASLLRRQPRIFNLSE 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,896,604
Number of Sequences: 28952
Number of extensions: 176619
Number of successful extensions: 571
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)