Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F17
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    77   1e-15
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   2.4  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    25   7.3  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    25   7.3  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    24   9.6  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 77.0 bits (181), Expect = 1e-15
 Identities = 32/57 (56%), Positives = 40/57 (70%)
 Frame = +2

Query: 191 YGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXKRKGQMIQF 361
           +GGQ+KP+F         +VLRLEC  CK ++Q+ LKRCKHFELGG+ K KG  IQF
Sbjct: 50  FGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106



 Score = 25.8 bits (54), Expect = 3.1
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +1

Query: 94  NATKYTRYHST--KSPRKGTLPXAXRRYDRKQQGLRWSVQTHLQKEGK 231
           N  K+T +  T  K      L    RRYDRKQ G     +    K+ K
Sbjct: 16  NCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAK 63



 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 48  MVNVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQ 155
           MVN+PK R+TY              +QYKK  +   AQ
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQ 38


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 151 AACLSLDFLYCDTLCTLWHL 92
           A  + L +LY DTL + WHL
Sbjct: 681 AVAILLHYLYTDTLLSPWHL 700


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 139 SLDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 41
           S+ F +   L TL+H   + + + C G F +F+
Sbjct: 67  SISF-FSGLLLTLFHFPIIGFFVECLGFFNLFK 98


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 357 WIICPFLXLSPPSSKCLHLFNATCDLTLQSAHSRRSTIFLVV 232
           W+ C  +           L NA C+L L SA +  S++  VV
Sbjct: 41  WVSCSEMCQKRTKHLFRELQNALCELYLSSATTNDSSLLSVV 82


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 195 VVSPNPSSKRRQKPLRKLCSVLS 263
           V SPNP S +R+K  R+  S+ S
Sbjct: 276 VSSPNPPSAKREKKKRRKSSMSS 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,632
Number of Sequences: 5004
Number of extensions: 26487
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)