Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F17
(456 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 87 6e-18
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 60 9e-10
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44) 28 3.2
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_44026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_10738| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 27 9.7
SB_55624| Best HMM Match : PHD (HMM E-Value=3.8) 27 9.7
SB_54364| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16) 27 9.7
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 87.0 bits (206), Expect = 6e-18
Identities = 37/57 (64%), Positives = 42/57 (73%)
Frame = +2
Query: 191 YGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXKRKGQMIQF 361
+GGQ+KP+F IVLR+EC CK R Q+ LKRCKHFELGGD KRKGQMIQF
Sbjct: 57 FGGQTKPVFHKKAKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 60.1 bits (139), Expect = 9e-10
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = +2
Query: 245 IVLRLECADCKVRSQVALKRCKHFELGGDXKRK 343
IVLR+EC CK R Q+ LKRCKHFELGGD KRK
Sbjct: 7 IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39
>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
Length = 251
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 158 LXDVMIVNSRAYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXK 337
L D +I NS++ +SK + I L C C V +A KRC+ +G K
Sbjct: 105 LDDSLIKNSQSE--ESKVFYNKIVLPTSNITTALNCKTCNVVYLIACKRCQKQYVGETSK 162
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 257 LECADCKVRSQVALKRCKHFELG 325
+EC +CK R +A C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135
>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -3
Query: 154 WAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 59
W L F+ C TLC W + Y R G
Sbjct: 283 WIGAWWLGFVICGTLCIFWSIWLFGYPKRIPG 314
>SB_44026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 96 IYIFCSTSCAVLVRSPFLSSFGTDIKQ 16
+Y + VLVRSP LSS G D+ Q
Sbjct: 87 VYGHTTEKAPVLVRSPNLSSVGRDLTQ 113
>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 281 RSQVALKRCKHFELGGDXKR 340
+S++A RC H LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514
>SB_10738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 96 IYIFCSTSCAVLVRSPFLSSFGTDIKQ 16
+Y + VLVRSP LSS G D+ Q
Sbjct: 4 VYGHTTEKAPVLVRSPNLSSVGRDLTQ 30
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 374 LEAFKIGSSVPFSXCHHRAQSACI 303
+E + +G S+ + C H SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284
>SB_55624| Best HMM Match : PHD (HMM E-Value=3.8)
Length = 349
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 101 QSTQGITVQ-KVQGKARCPXLXDVMIVNSRAYGGQSK 208
Q+TQG Q + +GKA C + D +V S G SK
Sbjct: 71 QTTQGGATQGEKEGKASCNGIADGEVVKSTVNGTASK 107
>SB_54364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 96 IYIFCSTSCAVLVRSPFLSSFGTDIKQ 16
+Y + VLVRSP LSS G D+ Q
Sbjct: 34 VYGHTTEKAPVLVRSPNLSSVGRDLTQ 60
>SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16)
Length = 986
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 142 GTLPXAXRRYDRKQQGLRWSV 204
G P YDRK +G RW+V
Sbjct: 570 GGSPFISESYDRKSRGYRWAV 590
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,709,244
Number of Sequences: 59808
Number of extensions: 215609
Number of successful extensions: 593
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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