Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F15
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 79 2e-15
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 76 2e-14
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 75 4e-14
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 74 7e-14
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 74 7e-14
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 74 7e-14
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 72 4e-13
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 72 4e-13
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 72 4e-13
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 71 9e-13
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 71 9e-13
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 68 6e-12
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 67 8e-12
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 53 2e-07
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 52 3e-07
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 52 3e-07
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 51 8e-07
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 50 2e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 48 4e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 48 4e-06
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 48 7e-06
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 46 2e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 46 3e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 46 3e-05
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 46 3e-05
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 46 3e-05
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 45 4e-05
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 45 4e-05
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 45 4e-05
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 44 9e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 44 9e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 44 9e-05
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 44 1e-04
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 43 2e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 42 3e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 42 3e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 42 4e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 42 4e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 42 4e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 42 4e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 42 5e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 41 6e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 41 6e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 41 8e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 41 8e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 40 0.001
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 40 0.001
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 40 0.002
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 0.002
At2g47310.1 68415.m05906 flowering time control protein-related ... 39 0.003
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 39 0.003
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 39 0.003
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 39 0.003
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 39 0.003
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 39 0.003
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 38 0.004
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 38 0.004
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 38 0.006
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 38 0.006
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 38 0.008
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 38 0.008
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.008
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 37 0.010
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 37 0.010
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 37 0.010
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 37 0.013
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 36 0.018
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.018
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 36 0.018
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 36 0.018
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 36 0.018
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 36 0.023
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 36 0.023
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.023
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.023
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 36 0.023
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 36 0.031
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.031
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.031
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 35 0.041
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 35 0.041
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.041
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.041
At3g13700.1 68416.m01731 RNA-binding protein, putative similar t... 35 0.041
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 35 0.041
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 35 0.054
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 35 0.054
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.071
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 34 0.071
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 34 0.071
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 34 0.071
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 34 0.071
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 34 0.071
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 34 0.071
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 34 0.071
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 34 0.094
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 34 0.094
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 34 0.094
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 34 0.094
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 34 0.094
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 33 0.12
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 33 0.12
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 33 0.12
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 33 0.12
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.16
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 33 0.16
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 33 0.16
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 33 0.16
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.16
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 33 0.16
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 33 0.22
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 33 0.22
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 33 0.22
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 33 0.22
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.29
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 32 0.38
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 32 0.38
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 32 0.38
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 32 0.38
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 32 0.38
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 31 0.50
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 31 0.50
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 31 0.50
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 31 0.50
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 31 0.50
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 31 0.50
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.50
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 31 0.66
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 31 0.66
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 31 0.88
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 30 1.2
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 30 1.2
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 30 1.2
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 1.2
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 30 1.5
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 30 1.5
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 30 1.5
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 30 1.5
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 29 2.0
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 29 2.0
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 2.0
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 2.7
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 2.7
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 2.7
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 29 2.7
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 2.7
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 2.7
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 2.7
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 29 2.7
At1g78410.1 68414.m09137 VQ motif-containing protein contains PF... 29 3.5
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 28 4.7
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 28 4.7
At5g24440.1 68418.m02880 RNA-binding protein, putative 28 6.2
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 28 6.2
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 28 6.2
At1g60095.1 68414.m06771 jacalin lectin family protein contains ... 28 6.2
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 28 6.2
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 28 6.2
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 27 8.2
At4g13330.1 68417.m02083 expressed protein 27 8.2
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 27 8.2
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 27 8.2
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 27 8.2
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 27 8.2
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 324
+VYVGNL ++ E+ F +G +R+VWVAR PPG+AF++FEDPRDA D++R LDG
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKN 62
Query: 325 CCGTRIRVEMSNG 363
G R+ + G
Sbjct: 63 --GWRVEQSHNRG 73
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 75.8 bits (178), Expect = 2e-14
Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 321
+YVGNL + K E+ +F KYG I ++ + PPG+AFVEFEDPRDA+D++ G DG
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 322 RCCGTRIRVEMSNG 363
G R+RVE+++G
Sbjct: 69 DFDGCRLRVEIAHG 82
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 74.9 bits (176), Expect = 4e-14
Identities = 34/73 (46%), Positives = 48/73 (65%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTR 324
+VYVGNL ++ E+ F +G IR+VWVAR PPG+AF++FED RDA D++R +DG
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKN 62
Query: 325 CCGTRIRVEMSNG 363
G R+ + G
Sbjct: 63 --GWRVEQSHNRG 73
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 74.1 bits (174), Expect = 7e-14
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 321
VYVGNL + + E+ +FSKYG + + V PPG+AFVEF+D RDAED++ G DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 322 RCCGTRIRVEMSNG 363
G R+RVE+++G
Sbjct: 69 DFDGHRLRVELAHG 82
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 74.1 bits (174), Expect = 7e-14
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 321
VYVGNL + + E+ +FSKYG + + V PPG+AFVEF+D RDAED++ G DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 322 RCCGTRIRVEMSNG 363
G R+RVE+++G
Sbjct: 69 DFDGHRLRVELAHG 82
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 74.1 bits (174), Expect = 7e-14
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 321
VYVGNL + + E+ +FSKYG + + V PPG+AFVEF+D RDAED++ G DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 322 RCCGTRIRVEMSNG 363
G R+RVE+++G
Sbjct: 69 DFDGHRLRVELAHG 82
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 71.7 bits (168), Expect = 4e-13
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVW--VARNPPGFAFVEFEDPRDAEDSVRGL 312
S +YVGNL + ++EI IF KYG I ++ V PP + FVEFE RDAED+++G
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 313 DGTRCCGTRIRVEMSNG 363
DG G R+RVE+++G
Sbjct: 66 DGYNLDGCRLRVELAHG 82
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 71.7 bits (168), Expect = 4e-13
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
+VYVGNL ++ E+ F +G +RNVWVAR PPG+AF+EF+D RDA D++ LD
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 71.7 bits (168), Expect = 4e-13
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
+VYVGNL ++ E+ F +G +RNVWVAR PPG+AF+EF+D RDA D++ LD
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 70.5 bits (165), Expect = 9e-13
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 321
+YVGNL + + E+ +FSKYG + + + PPG+AFVEFED RDA+D++ G DG
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 322 RCCGTRIRVEMSNG 363
G +RVE+++G
Sbjct: 69 DFDGHHLRVELAHG 82
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 70.5 bits (165), Expect = 9e-13
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 321
+YVGNL + + E+ +FSKYG + + + PPG+AFVEFED RDA+D++ G DG
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 322 RCCGTRIRVEMSNG 363
G +RVE+++G
Sbjct: 69 DFDGHHLRVELAHG 82
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 67.7 bits (158), Expect = 6e-12
Identities = 35/84 (41%), Positives = 53/84 (63%)
Frame = +1
Query: 112 MSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 291
M RY + + ++YVG L + ++ ++FS+YG +R+V + R+ +AFVEF DPRDA
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDA 57
Query: 292 EDSVRGLDGTRCCGTRIRVEMSNG 363
+D+ LDG G+RI VE S G
Sbjct: 58 DDARHYLDGRDFDGSRITVEFSRG 81
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 67.3 bits (157), Expect = 8e-12
Identities = 35/84 (41%), Positives = 53/84 (63%)
Frame = +1
Query: 112 MSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 291
M RY + + ++YVG L + ++ ++FS+YG +R+V + R+ +AFVEF DPRDA
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDA 57
Query: 292 EDSVRGLDGTRCCGTRIRVEMSNG 363
+D+ LDG G+RI VE S G
Sbjct: 58 DDARYYLDGRDFDGSRITVEASRG 81
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 321
VYVGN + ++ ++FSK+G ++ V + G+AFV FED RDAED++R D T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS---GYAFVYFEDERDAEDAIRRTDNT 58
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 52.0 bits (119), Expect = 3e-07
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 327
V+ GN +A + ++ ++F KYG + V + GFAFV ED RDAED++R LD
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60
Query: 328 --CGTRIRVE 351
G R+RVE
Sbjct: 61 GRTGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 52.0 bits (119), Expect = 3e-07
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 327
V+ GN +A + ++ ++F KYG + V + GFAFV ED RDAED++R LD
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60
Query: 328 --CGTRIRVE 351
G R+RVE
Sbjct: 61 GRTGRRLRVE 70
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 50.8 bits (116), Expect = 8e-07
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 327
V+ GN +A + ++ ++F KYG + V + GFAFV ED RDAED++R LD
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEF 60
Query: 328 --CGTRIRVE 351
G R+RVE
Sbjct: 61 GRKGRRLRVE 70
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
V+VGN + ++ ++F KYG + V + G+AFV FED RDAED++R LD
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDERDAEDAIRKLD 56
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 181 KYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 351
+++I K F YG + NV + RN F+FV+FE DA ++ ++ + VE
Sbjct: 107 EHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVE 160
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDS 300
++ +VYVGNL + + + FS YGN+ + V R+ GF FV + +AE +
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 301 VRGLDGTRCCGTRIRVEM 354
V G+DG G R+ V++
Sbjct: 61 VSGMDGKELNGRRVSVKL 78
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +1
Query: 124 REWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 288
R DL + V NL + + ++ K F ++G ++++++ R+ P GF FV+F DP D
Sbjct: 30 RSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPAD 89
Query: 289 AEDSVRGLDGTRCCGTRIRV 348
A D+ +DG G + V
Sbjct: 90 AADAKHHMDGYLLLGRELTV 109
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 47.6 bits (108), Expect = 7e-06
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG- 255
IF+ PF K + + VYV NL + E+ F +YG+I + V R+ G
Sbjct: 204 IFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK 263
Query: 256 ---FAFVEFEDPRDAEDSVRGLDGTR 324
F FV FE+P DA +V L+G +
Sbjct: 264 SRCFGFVNFENPEDAARAVEALNGKK 289
Score = 35.1 bits (77), Expect = 0.041
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1
Query: 142 CKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 306
C +YVG+L N + ++ F++ + +V V R+ G+ +V + + DAE +++
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 307 GLDGTRCCGTRIRVEMSN 360
L+ + G IR+ S+
Sbjct: 106 KLNYSYLNGKMIRITYSS 123
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 315
+YV NL + ++ ++F+++G I + V R+P G + FV F +A + ++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 316 GTRCCGTRIRVEMS 357
G G + V ++
Sbjct: 390 GKMVGGKPLYVALA 403
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/67 (32%), Positives = 39/67 (58%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 327
++V NL ++ S E+ IFS YG IR V + ++EF D R A+ +++GL+G
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEV 356
Query: 328 CGTRIRV 348
G ++++
Sbjct: 357 AGRQLKL 363
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +1
Query: 154 VGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 333
V NL + S ++ IF YG I+ + N FVEF D R A+ +++ L+ T G
Sbjct: 226 VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAG 285
Query: 334 TRIRVEMS 357
RI++E S
Sbjct: 286 KRIKLEHS 293
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAED 297
D KVYVGNL +K + +FS+ G + + V+R P GF FV F D E
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 298 SVRGLDGTRCCGTRIRV 348
++ L+ + G +IRV
Sbjct: 234 AIVALNNSLLEGQKIRV 250
Score = 30.7 bits (66), Expect = 0.88
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 309
+VY+GN+ + ++ K+ ++G + V V + F F + DA V
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 310 LDGTRCCGTRIRVEMS 357
L+G G I+V ++
Sbjct: 137 LNGNTVEGREIKVNIT 152
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +1
Query: 124 REWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 288
R+ DL + V NL + + ++ + F ++G ++++++ R+ P GF F++F DP D
Sbjct: 31 RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPAD 90
Query: 289 AEDSVRGLDGTRCCGTRIRV 348
A ++ +DG G + V
Sbjct: 91 AAEAKHQMDGYLLLGRELTV 110
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +1
Query: 160 NLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 339
N+ T S E+ ++F YG IR + N F+E+ D RDAE +++ L+ + G
Sbjct: 276 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKC 335
Query: 340 IRVEMS 357
I++E+S
Sbjct: 336 IKLELS 341
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +1
Query: 160 NLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 339
N+ T S E+ ++F YG IR + N F+E+ D RDAE +++ L+ + G
Sbjct: 289 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKC 348
Query: 340 IRVEMS 357
I++E+S
Sbjct: 349 IKLELS 354
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +1
Query: 154 VGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 333
VGN+ +N YE+ +F ++G+I+ + A GF V + D R A+++ R L G
Sbjct: 221 VGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLLRG 280
Query: 334 TRIRVEMS 357
T++ + S
Sbjct: 281 TKLDIRYS 288
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +1
Query: 154 VGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 333
V NL ++ S E+ ++ YG ++ + + ++EF D R A ++ GL+G G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
Query: 334 TRIRV 348
++++
Sbjct: 366 KKLQL 370
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSV 303
S VY+GN+ ++ ++ ++FS+ G I+ + + + P GF FV F D ED+V
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92
Query: 304 RGLDGTRCCGTRIRVEMSNG 363
+ + GT IRV+ G
Sbjct: 93 KYISGTILDDRPIRVDFDWG 112
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 142 CKVYVGNLGTNA-SKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
C V V NL ++ + ++ +FS YGNI + + RN P A V+ D AE +V L G
Sbjct: 245 CTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
Query: 319 TRCCGTRIRVEMS 357
G R+ V S
Sbjct: 305 AMLFGKRLEVNFS 317
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = +1
Query: 256 FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 363
+AFVEF DPRDA+D+ LDG G+RI VE S G
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRG 40
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +1
Query: 118 RYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRN--VWVARN---PPGFAFVEFEDP 282
R + +L +++VG L + ++ ++ F +YG I + V R+ P GF F+ F D
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63
Query: 283 RDAEDSVRGLDG 318
R A+D+++ + G
Sbjct: 64 RGADDAIKHMHG 75
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +1
Query: 118 RYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRN--VWVARN---PPGFAFVEFEDP 282
R + +L +++VG L + ++ ++ F +YG I + V R+ P GF F+ F D
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63
Query: 283 RDAEDSVRGLDG 318
R A+D+++ + G
Sbjct: 64 RGADDAIKHMHG 75
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = +1
Query: 256 FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 363
+AFVEF DPRDA+D+ LDG G+RI VE S G
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRG 40
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 312
++V L +S+ +I + F YG I+ V + + P G+AF+E+ RD + + +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 313 DGTRCCGTRIRVEMSNG 363
DG + G R+ V++ G
Sbjct: 200 DGQKIDGRRVLVDVERG 216
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +1
Query: 100 LKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAF 264
+ + S + ++ S VYVG + + ++ ++ +FS+YG I +V + R+ GFAF
Sbjct: 22 ISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAF 81
Query: 265 VEFEDPRDAEDSVRGLDGTRCCGTRIRVE 351
+ +ED R +V L+G G I+V+
Sbjct: 82 LAYEDQRSTILAVDNLNGALVLGRTIKVD 110
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVA--RNPPG--FAFVEFEDPRDAEDSVRGLD 315
VYVG L + ++ + ++FS YG++ V + R+ G + FV F + R A+D++ +D
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 316 GTRCCGTRIRV 348
G G +RV
Sbjct: 69 GKSIGGRAVRV 79
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVA--RNPPGFAFVEFEDPRDAEDSVRGLDG 318
+YV NL N + E+ IF KYG IR + + + G AFV +ED DA+++V L G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +1
Query: 109 KMSRYREWDLSC-KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP----PGFAFVEF 273
K+ + D C K++V N+ A+K E+ ++FS +G I+++ + + G+AFVEF
Sbjct: 657 KVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEF 716
Query: 274 EDPRDAEDSVRGLDGTRCCGTRIRVEMSN 360
++A ++ + L T G + +E +N
Sbjct: 717 VTKQEALNAKKALASTHFYGRHLVLEWAN 745
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDS 300
+S +++V L + + ++FS +G I+ + R+ P GF F+ F+ DA +
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 301 VRGLDGTRCCGTRIRVEMS 357
++ LDG G I VE++
Sbjct: 65 LKSLDGKIVDGRLIFVEVA 83
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 303
L K++VG L N S+ E+ +FSKYG I+++ + R G AF+++E A ++
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
Query: 304 RGLDG 318
++G
Sbjct: 164 ESING 168
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 303
L K++VG L N S+ E+ +FSKYG I+++ + R G AF+++E A ++
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
Query: 304 RGLDG 318
++G
Sbjct: 164 ESING 168
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = +1
Query: 154 VGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDG 318
V N+ + E+ + F ++G +R+V++ R+ P GFAFVEF D DA ++ R ++
Sbjct: 51 VRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNR 110
Query: 319 TRCCGTRIRVEMSN 360
G I V +++
Sbjct: 111 RSFAGREITVVVAS 124
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNI--RNVWVAR---NPPGFAFVEFEDPRDAEDSV 303
S K++VG + + ++ + + FSKYG + + V R GFAFV F +A +++
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 304 RGLDGTRCCGTRIRV 348
+ LDG G RIRV
Sbjct: 93 Q-LDGQDLHGRRIRV 106
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN---- 246
+++ PF K + E VYV NL + S E+ K+F ++G + + R+
Sbjct: 203 VYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK 262
Query: 247 PPGFAFVEFEDPRDAEDSVRGLDG 318
GF FV FE+ DA +V L+G
Sbjct: 263 SKGFGFVNFENSDDAARAVDALNG 286
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 312
+YVG+L + ++ + F++ G + +V V R+ G+ +V + P+DA ++ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 313 DGTRCCGTRIRVEMS 357
+ G IRV S
Sbjct: 107 NFMALNGRAIRVMYS 121
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 315
+YV NL + + ++ + F+ +G I + V R+P G + FV F P +A ++ ++
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 316 G 318
G
Sbjct: 389 G 389
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 309
+VYVGNL + +FS+ G + V + GF FV ++ ++ +++++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 310 LDGTRCCGTRIRV 348
LDG G +IRV
Sbjct: 265 LDGADLDGRQIRV 277
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 309
K++VGNL N ++ ++F GN+ V V GF FV + E + +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 310 LDGTRCCGTRIRV 348
+G G +RV
Sbjct: 152 FNGYELDGRPLRV 164
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGL 312
++YVGNL N S+ ++ K+F +G++ V V R+ GF FV+F DA +++
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLN 345
Query: 313 DGTRCCGTRIRV 348
G I+V
Sbjct: 346 GQLEIAGRAIKV 357
Score = 34.7 bits (76), Expect = 0.054
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 181 KYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRI 342
K ++ + SK+G + +++V +N GF ++ FE+ + A + R L G G I
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMI 541
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +1
Query: 124 REWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 288
R +D + ++YVGNL + + ++FS++G + + V + GF FV+ + +
Sbjct: 201 RVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENE 260
Query: 289 AEDSVRGLDGTRCCGTRIRVEMS 357
++ LDG G I+V ++
Sbjct: 261 VNVAIAALDGQNLEGRAIKVNVA 283
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/67 (31%), Positives = 38/67 (56%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 327
V+VG L + + + +FS+YG I +V + FV+F + AE+++R L+G +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGVQL 321
Query: 328 CGTRIRV 348
GT +R+
Sbjct: 322 GGTTVRL 328
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-- 252
I++ F KT R + + +Y+ NL + S+ + + F+++G I ++ +A++
Sbjct: 182 IYVGKFMKKT--DRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRL 239
Query: 253 --GFAFVEFEDPRDAEDSVRGLDGTR 324
G+AFV F++P DA + ++GT+
Sbjct: 240 CRGYAFVNFDNPEDARRAAETVNGTK 265
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG--FAFVEFEDPRDAEDSVRGLDGT 321
++VG L N + E+ IF ++G + +V + PPG FV++ + AE ++ L+GT
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKI---PPGKRCGFVQYANKASAEHALSVLNGT 318
Query: 322 RCCGTRIRV 348
+ G IR+
Sbjct: 319 QLGGQSIRL 327
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +1
Query: 124 REWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRD 288
R ++ + +VYVGNL + + ++FS++G + V + GF FV D +
Sbjct: 238 RVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297
Query: 289 AEDSVRGLDGTRCCGTRIRVEMS 357
+++ LDG G IRV ++
Sbjct: 298 LNEAISALDGQNLEGRAIRVNVA 320
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN---- 246
+++ PF + + VYV NL + + ++ F +YG I + V ++
Sbjct: 8 VYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK 67
Query: 247 PPGFAFVEFEDPRDAEDSVRGLDG 318
GF FV FE+ DA +V L+G
Sbjct: 68 SKGFGFVNFENADDAARAVESLNG 91
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVR 306
S +YV NL + S ++ +IFS +G + + V R+P G FV F P +A +++
Sbjct: 131 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 190
Query: 307 GLDG 318
L G
Sbjct: 191 QLSG 194
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Frame = +1
Query: 91 PFQLKT---KMSRYREWDLSC----KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR-- 243
P Q+K ++ R D SC K++VG L N S+ E+ +FS+YG I+++ + R
Sbjct: 85 PLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGS 144
Query: 244 --NPPGFAFVEFEDPRDAEDSVRGLDG 318
G F+++E A ++ L+G
Sbjct: 145 LQTSKGCLFLKYESKEQAVAAMEALNG 171
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGL 312
K+YV L +K E+ ++FS+YG I ++++A + G+AFV+F A +++ L
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 313 DG 318
+G
Sbjct: 268 NG 269
Score = 33.5 bits (73), Expect = 0.12
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNV 231
K+YV + A++Y+I ++F KYGN+ +
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEI 139
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Frame = +1
Query: 97 QLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFA 261
QL + S+ ++W K+ + NL A +I +FS G + +V++ +N P GFA
Sbjct: 320 QLGGEGSKAQKW----KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFA 375
Query: 262 FVEFEDPRDAEDSVRGLDG 318
FV+F +DA ++++ +G
Sbjct: 376 FVKFTCKKDAANAIKKFNG 394
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 312
++V N+ +N E+ +F +YG+IR ++ GF + + D R A ++R L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 312
++V N+ +N E+ +F +YG+IR ++ GF + + D R A ++R L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 294
+Y+G + + EI FS++G ++ V VARN F F++FEDP AE
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE 115
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 303
L K++VG L N S+ E+ +FS+YG I+++ + R G F+++E A ++
Sbjct: 98 LEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAM 157
Query: 304 RGLDG 318
L+G
Sbjct: 158 EALNG 162
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 309
K+YV L ++ + F ++GN+ ++ VA P GFAF+ +E +A +++G
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 310 LDGTRCCGTRIRVE 351
+ G G I VE
Sbjct: 138 MHGKFLDGRVIFVE 151
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 142 CKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 306
C++YV N+ + ++ +F +G + +V V+RNP G +V A+ ++
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIA 167
Query: 307 GLDGTRCCGTRIRVEMS 357
LDGT G +RV S
Sbjct: 168 SLDGTEVGGREMRVRYS 184
Score = 29.5 bits (63), Expect = 2.0
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +1
Query: 88 HPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG---- 255
+P L + + ++ KVYVGNL + FSK+G I + V +
Sbjct: 194 NPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNR 253
Query: 256 -FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRV 348
FAF+ F + D+ +GT+ G RI V
Sbjct: 254 VFAFLSFTSGEE-RDAALSFNGTQYEGRRIIV 284
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 321
++VG + + ++ + FS++G + +V + G FV+F D + AED++ L+GT
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESLNGT 379
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSV 303
S K+++G L + + + FS +G + V +A + GF FV+F + DA +
Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99
Query: 304 RGLDGTRCCGTRIRVEMS 357
+DG G +R+ +
Sbjct: 100 DAMDGKGLLGRPLRISFA 117
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 300
+S K++VG L + + F+ +G + V + GF FV F A ++
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 301 VRGLDGTRCCGTRIRVEMS 357
++ +DG G +IRV ++
Sbjct: 93 IKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 300
+S K++VG L + + F+ +G + V + GF FV F A ++
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 301 VRGLDGTRCCGTRIRVEMS 357
++ +DG G +IRV ++
Sbjct: 93 IKEMDGKELNGRQIRVNLA 111
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +1
Query: 109 KMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP----GFAFVEFE 276
+++R+ E +Y+ NL + ++ ++FS+YGN+ + V NP GF FV +
Sbjct: 322 RINRF-EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380
Query: 277 DPRDAEDSVRGLDG 318
+P +A ++ ++G
Sbjct: 381 NPEEALRALSEMNG 394
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 315
+Y G+L ++ + +F N+ +V V R+ G+A++ F +P DA ++ L+
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 316 GTRCCGTRIRVEMSN 360
T IR+ +SN
Sbjct: 111 YTPLFDRPIRIMLSN 125
Score = 35.1 bits (77), Expect = 0.041
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 315
VYV NL + E+ K F K+G I + V R+ G F FV FE A +V ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 316 G 318
G
Sbjct: 291 G 291
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 148 VYVGNLG---TNASKYEIXKIFSKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 312
++VG+L T+A+ Y+ +FS + R +W + GF FV F + +DA+ ++ +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 313 DGTRCCGTRIR 345
+G +IR
Sbjct: 206 NGKWLSSRQIR 216
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 139 SCK-VYVGNLGTNASKYEIXKIFSKYGNIR-NVWVARNPPGFAFVEFEDPRDAEDSVRGL 312
+C+ VYVGN+ T ++ + +IF+ G + + + ++ + FV + D R A ++ L
Sbjct: 57 TCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSL 116
Query: 313 DGTRCCGTRIRV 348
+G G I+V
Sbjct: 117 NGRHLFGQPIKV 128
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +1
Query: 268 EFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 363
EF DPRDA+D+ LDG G+RI VE S G
Sbjct: 20 EFGDPRDADDARHYLDGRDFDGSRITVEFSRG 51
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 315
+YVG+L + ++ + +F++ + N+ V R+ G+A+V F +P DA ++ L+
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106
Query: 316 GTRCCGTRIRVEMSN 360
IR+ +SN
Sbjct: 107 YAPIRDRPIRIMLSN 121
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 315
VYV NL + E+ K F KYG+I + V ++ G F FV F P A +V ++
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 316 G 318
G
Sbjct: 287 G 287
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +1
Query: 109 KMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP----GFAFVEFE 276
++SR+ + S +Y+ NL + + ++ ++FS+YGN+ + V N GF FV +
Sbjct: 318 RISRFEKLQGS-NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYS 376
Query: 277 DPRDAEDSVRGLDG 318
+P +A +++ ++G
Sbjct: 377 NPEEALLAMKEMNG 390
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSV 303
S K+++G + + + + + F+KYG + + V + GF FV F A ++
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 304 RGLDGTRCCGTRIRVEMSN 360
+ LDG G ++V +N
Sbjct: 99 QALDGRDLHGRVVKVNYAN 117
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 253 GFAFVEFEDPRDAEDSVRGLDGT 321
G+AFV FED RDAED++R D T
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNT 32
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 309
+++VG+L AS+ ++ K+F G + V + +NP G AF+ F A+ +V+
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 310 LDGTRCCGTRIRVEMS 357
L G + V S
Sbjct: 275 LKSPMINGKKCGVTAS 290
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 36.3 bits (80), Expect = 0.018
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +1
Query: 142 CK-VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
CK ++VG +G N SK ++ + FSK+G I + R AF+++ + DA + + ++G
Sbjct: 249 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK-TAFIDYYEMDDALQA-KSMNG 306
Query: 319 TRCCGTRIRVE 351
G+ +RV+
Sbjct: 307 KPMGGSFLRVD 317
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
S ++VG+L ++ ++ ++F +YG+I + V + GFAF+ + +A + L G
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQG 75
Query: 319 TRCCGT 336
GT
Sbjct: 76 ANLNGT 81
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 288
D C ++VG L + ++ + ++ SKYG I+N+ + R+ G+ FVE+E ++
Sbjct: 61 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKE 117
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 36.3 bits (80), Expect = 0.018
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 300
++ K+Y GNL N + +I + N V V N GFAFV + D
Sbjct: 83 VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 142
Query: 301 VRGLDGTRCCGTRIRVEMSN 360
+ LDGT G ++V ++
Sbjct: 143 IDNLDGTEYLGRALKVNFAD 162
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 309
K++VGNL + + F + G++ V + G+ FV + + E ++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 310 LDGTRCCGTRIRVEMSNG 363
LDG G IRV ++ G
Sbjct: 238 LDGFELEGRAIRVNLAQG 255
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRN--VWVARNPP---GFAFVEFEDPRDAEDSVRG 309
+++VG L + ++ + FS++G+I + + + R+ GF F+ F D R ++S+R
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 310 LDGTRCCGTRI 342
+ G R G R+
Sbjct: 68 MHG-RDFGDRV 77
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 35.9 bits (79), Expect = 0.023
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNI--RNVWVARNPP---GFAFVEFEDPRDAEDS 300
+S K+++G L + F+ +G++ V V R GF FV F D A +
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 301 VRGLDGTRCCGTRIRVEMSN 360
+ +DG G IRV +N
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 35.9 bits (79), Expect = 0.023
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNI--RNVWVARNPP---GFAFVEFEDPRDAEDS 300
+S K+++G L + F+ +G++ V V R GF FV F D A +
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 301 VRGLDGTRCCGTRIRVEMSN 360
+ +DG G IRV +N
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 35.9 bits (79), Expect = 0.023
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 306
S VYV NL + + +FS+YG + +V V R+ GF FV F +P +A+ ++
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Query: 307 GLDG 318
L G
Sbjct: 261 SLCG 264
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN---PPGFAFVEFEDPRDAEDSVRGLDG 318
+YV NL ++ + + ++F +G+I + V GF FV+F+ + A + L G
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 319 TRCCGTRIRV 348
+ G ++ V
Sbjct: 174 SMVYGKKLFV 183
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVRGLD 315
+YV NL + ++ + +IF YG I + V GF FV F + +++ + R L+
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 316 GTRCCGTRIRVEMS 357
G G I V ++
Sbjct: 366 GFLVDGKPIVVRVA 379
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
++V NL + + +F +Y + V + PG AFVEF D + +++GL G
Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQG 235
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/58 (27%), Positives = 35/58 (60%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 321
++VG L + ++ ++ + FS +G + +V + G FV+F + + AE+++ L+GT
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK-GCGFVQFANRQSAEEAIGNLNGT 385
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 303
S ++V +L N ++ + +IF +G + +V +A + P G +VEF+ DAE +
Sbjct: 97 SLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQ 156
Query: 304 RGLDGTRCCGTRIR 345
+DG + G ++
Sbjct: 157 LYMDGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 303
S ++V +L N ++ + +IF +G + +V +A + P G +VEF+ DAE +
Sbjct: 97 SLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQ 156
Query: 304 RGLDGTRCCGTRIR 345
+DG + G ++
Sbjct: 157 LYMDGAQIDGKVVK 170
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.1 bits (77), Expect = 0.041
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +1
Query: 160 NLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDGTR 324
N+ + ++ +F+KYG + +V++ R+ GFAFV ++ +A +V LDG
Sbjct: 22 NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81
Query: 325 CCGTRIRVEMS 357
G I V+ +
Sbjct: 82 VDGREITVQFA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.1 bits (77), Expect = 0.041
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +1
Query: 160 NLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDGTR 324
N+ + ++ +F+KYG + +V++ R+ GFAFV ++ +A +V LDG
Sbjct: 22 NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81
Query: 325 CCGTRIRVEMS 357
G I V+ +
Sbjct: 82 VDGREITVQFA 92
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 35.1 bits (77), Expect = 0.041
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 309
K+YVGNL N S+ ++ +IF +G + V + +P GF F++F ++ +
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 310 LDG-TRCCGTRIRV 348
L+G G I+V
Sbjct: 326 LNGKLEIAGRTIKV 339
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 205 SKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 312
SKYG + +++V +N GF ++ F+ A + R +
Sbjct: 466 SKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAM 501
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 303
+C VY+GN+ S + I + G + ++ + R+ P GFAF E+E A+ +V
Sbjct: 6 NCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAV 65
Query: 304 RGLDG 318
+ G
Sbjct: 66 KLFSG 70
>At3g13700.1 68416.m01731 RNA-binding protein, putative similar to
mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam
profile:PF00076 rrm:RNA recognition motif
Length = 296
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV-ARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+++ NLG N ++ E+ ++ S+Y + + AR AF +FE+ A D++ L G
Sbjct: 225 LFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 282
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 35.1 bits (77), Expect = 0.041
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 312
VYVG L S+ + ++F + G + NV+V ++ + F+E+ DA+ +++ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 313 DGTRCCGTRIRVEMSN 360
+ + G IRV ++
Sbjct: 87 NMIKLHGKPIRVNKAS 102
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 34.7 bits (76), Expect = 0.054
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGL 312
+YV NL + + +I +FS +G + V V R G AFV + DA + R +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 313 DGTRCCGTRIRVEMS 357
D G ++ V ++
Sbjct: 119 DAKILNGRKLTVSIA 133
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/62 (27%), Positives = 38/62 (61%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
++ ++VG L ++ + ++ + FS++G I +V + G FV+F + +AE+++ L+
Sbjct: 304 INTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK-GCGFVQFVNRPNAEEALEKLN 362
Query: 316 GT 321
GT
Sbjct: 363 GT 364
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.3 bits (75), Expect = 0.071
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 154 VGNLGTNA--SKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 327
V N G +A + + ++F+ + + + P GF F+ FE DA+ +++ L+G
Sbjct: 73 VSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIV 132
Query: 328 CGTRIRVE 351
G I VE
Sbjct: 133 NGRLIFVE 140
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 34.3 bits (75), Expect = 0.071
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 315
+Y+ NL S+ + +FS +G + +A++ GFAF+EFE A ++ +D
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHMD 78
Query: 316 GTRCCGTRI 342
G R G +I
Sbjct: 79 G-RLIGQKI 86
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 34.3 bits (75), Expect = 0.071
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
K+++G L + + K F KYG I + + R+ P GF F+ F DP
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFE 276
K++VG + + ++ E+ F+KYGN+ V R+ GF FV F+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 34.3 bits (75), Expect = 0.071
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
K+++G L + + K F KYG I + + R+ P GF F+ F DP
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFE 276
K++VG + + ++ E+ F+KYGN+ V R+ GF FV F+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 34.3 bits (75), Expect = 0.071
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 297
D+ + +VG L + F++YG++ + + + GF FV F+D + +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 298 SVRGLDGTRCCGTRIRV 348
++ G++G G I V
Sbjct: 65 AIEGMNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 34.3 bits (75), Expect = 0.071
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 297
D+ + +VG L + F++YG++ + + + GF FV F+D + +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 298 SVRGLDGTRCCGTRIRV 348
++ G++G G I V
Sbjct: 65 AIEGMNGQDLDGRSITV 81
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+++ NL + + +F +Y + + + PG AFVE+ED + +++ L G
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 212
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+++ NL + + +F +Y + + + PG AFVE+ED + +++ L G
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 213
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.9 bits (74), Expect = 0.094
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFED 279
D + K++VG L + E K F KYG I + + ++ P GF FV + D
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 92
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.9 bits (74), Expect = 0.094
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 312
+++G+L + + FS+ G + +V V RN P G+ F+EF AE +++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 313 DGTRCCGTRIRVEMS 357
+GT+ GT + ++
Sbjct: 86 NGTQMPGTELTFRLN 100
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.9 bits (74), Expect = 0.094
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNI--RNVWVARN---PPGFAFVEFEDPRDAEDSVRG 309
KVY GNLG N + + F + V RN GF F+ FE + + ++
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 310 LDGTRCCGTRIRVEMSN 360
++G G +R+ +++
Sbjct: 280 MNGVEVEGRALRLNLAS 296
Score = 30.7 bits (66), Expect = 0.88
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVW-----VARNPPGFAFVEFEDPRDAEDSVRG 309
++YVGNL + E+ +IF + G + +V V GF FV +A+++++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 310 LDGTRCCGTRIRV 348
+ ++ G ++V
Sbjct: 177 FNSSQIGGRTVKV 189
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 33.9 bits (74), Expect = 0.094
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 160 NLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 339
NL S + +IF YG I+ + FVEF D RDA + ++G G +
Sbjct: 219 NLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQ 278
Query: 340 IRVEMS 357
+ +E S
Sbjct: 279 VVIEFS 284
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 211 YGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
YG++R V + R G V F D RDA+ +VR + G
Sbjct: 129 YGDVRGVQMERISEGIVTVHFYDIRDAKRAVREVCG 164
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 33.9 bits (74), Expect = 0.094
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVR 306
K++VG + S+ + + FS+YG + VA+ P GF FV F + D ++R
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 309
K++VG++ A++ EI F ++GN+ V + ++ G FV++ +DA+ ++R
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 310 L 312
L
Sbjct: 181 L 181
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 309
K++VG++ A++ EI F ++GN+ V + ++ G FV++ +DA+ ++R
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 310 L 312
L
Sbjct: 181 L 181
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 318
+++ NL + + +F +Y + + + PG AFVE+ED A +++ L G
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/62 (25%), Positives = 38/62 (61%)
Frame = +1
Query: 136 LSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 315
++ ++VG L ++ + ++ + F+++G I +V + G FV+F + +AE+++ L+
Sbjct: 302 MNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK-GCGFVQFVNRPNAEEALEKLN 360
Query: 316 GT 321
GT
Sbjct: 361 GT 362
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 306
S +YVGN+ + E+ + F G + V + + P GFA+VEF + ++S+
Sbjct: 102 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLI 161
Query: 307 GLDGTRCCGTRIRV 348
L+ + G +I+V
Sbjct: 162 -LNESELHGRQIKV 174
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-GFAFVEFEDPRDAEDSVRGLDGTR 324
++VGNL + E+ F ++G + ++ A P +AFV F DA ++ L G
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESL--AFQPGRSYAFVNFNHDEDAFAAIESLQGFP 82
Query: 325 CCGTRIRVEMS 357
G +R+E +
Sbjct: 83 LSGNPLRIEFA 93
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 309
++YVGNL + +F++ G + V + GF FV ++ + ++
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 310 LDGTRCCGTRIRV 348
L+G G +IRV
Sbjct: 310 LNGADLDGRQIRV 322
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 309
K++VGNL N ++ ++F GN+ V V GF FV + E + +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 310 LDGTRCCGTRIRV 348
+G G +RV
Sbjct: 160 FNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 309
++YVGNL + +F++ G + V + GF FV ++ + ++
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 310 LDGTRCCGTRIRV 348
L+G G +IRV
Sbjct: 318 LNGADLDGRQIRV 330
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 309
K++VGNL N ++ ++F GN+ V V GF FV + E + +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 310 LDGTRCCGTRIRV 348
+G G +RV
Sbjct: 160 FNGYEFEGRPLRV 172
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
K+++G + + + + + FS +G + V V R P GF FV F DP
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 33.1 bits (72), Expect = 0.16
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSC--KVYVGNLG---TNASKYEIXKIFSKYGNIRNVWVAR 243
IF P ++ + + D S ++VG+L T+A+ ++ F+ + R +W +
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQK 184
Query: 244 N--PPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIR 345
GF FV F + +DA+ ++ ++G +IR
Sbjct: 185 TGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 220
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 291
VYVGNL ++ ++ ++F G I V V R+ GF FV + +A
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNTHDEA 319
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 294
SCK+++G + S+ + F +G + + ++ GF FV F DP AE
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 294
SCK+++G + S+ + F +G + + ++ GF FV F DP AE
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 312
V V NL + + ++ ++F +G + V+VA + GF FV F DA+ ++ L
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 313 DGTRCCGTRIRVE 351
+G +RVE
Sbjct: 275 NGYGYDNLILRVE 287
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 160 NLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 339
NL S + IF YG ++ V FVEF D RDA ++R ++G G
Sbjct: 189 NLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKP 248
Query: 340 IRVEMS 357
+ ++ S
Sbjct: 249 MVIQFS 254
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.29
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDA----ED 297
KV+VG L + K + F KYG+I + R G+ FV F+D + A ED
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 298 SVRGLDGTR 324
S ++G R
Sbjct: 78 STPIINGRR 86
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV----ARNPPG--FAFVEFEDPRDAEDSVR 306
VYV NL ++ S EI + F +G I+ V ++ G +AFVEFED E++++
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWV----ARNPPG--FAFVEFEDPRDAEDSVR 306
VYV NL ++ S EI + F +G I+ V ++ G +AFVEFED E++++
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
K++VG + + ++ + F+ YG + V R+ P GF FV F DP
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP 57
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 309
+VY+GNL + ++ +I K+FS I +V + +N G+A V+F+D +++
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALK- 320
Query: 310 LDGTRCCGTRIRV 348
LD CG +++
Sbjct: 321 LDQQVICGRPVKI 333
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP-PGFAFVEFEDPRDAEDSVRGLDG 318
+++GNLG N ++ E+ + S + + + R F+EFED A + L G
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQG 292
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 315
VYVGN+ + E+ F G + V + + P GFA+VEF + +++++ L+
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 316 GTRCCGTRIRV 348
+ G +++V
Sbjct: 150 ESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 315
VYVGN+ + E+ F G + V + + P GFA+VEF + +++++ L+
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 316 GTRCCGTRIRV 348
+ G +++V
Sbjct: 150 ESELHGRQLKV 160
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 297
++ + +VG L + ++ + FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 298 SVRGLDGTRCCGTRIRV 348
++ ++G G I V
Sbjct: 63 AIEEMNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 297
++ + +VG L + ++ + FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 298 SVRGLDGTRCCGTRIRV 348
++ ++G G I V
Sbjct: 63 AIEEMNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 297
++ + +VG L + ++ + FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 298 SVRGLDGTRCCGTRIRV 348
++ ++G G I V
Sbjct: 63 AIEEMNGKELDGRVITV 79
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 31.5 bits (68), Expect = 0.50
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 294
K+++G + + + + + F KYG++ + R+ GF F+ F DP AE
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAE 70
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 31.5 bits (68), Expect = 0.50
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +1
Query: 124 REWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAE 294
RE + VYV ++ + ++ + +FS G + + + +P FAFVEF D + A
Sbjct: 135 REDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAH 194
Query: 295 DSVRGLDGT 321
+++ L GT
Sbjct: 195 EAL-SLGGT 202
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 31.1 bits (67), Expect = 0.66
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 315
V+VGN+ + E+ + F G + V + + P GFA+VEF + +++++ L+
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 316 GTRCCGTRIRV 348
+ G +++V
Sbjct: 153 ESELHGRQLKV 163
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 31.1 bits (67), Expect = 0.66
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 124 REWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAE 294
RE + VYV ++ + ++ + +FS G + + + +P FAFVEF D + A
Sbjct: 122 REDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGAR 181
Query: 295 DSVRGLDGT 321
S L GT
Sbjct: 182 -SALSLGGT 189
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAED 297
D + ++G L S + F KYG++ V + GF F+ F++ + ++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 298 SVRGLDGTRCCGTRIRVE 351
++ ++G G I V+
Sbjct: 64 AIAAMNGMDLDGRTITVD 81
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNV-WVARNPPGFAFVEF 273
+++VG LG + + ++ KIFS G + V +V FA+++F
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDF 54
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/68 (20%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +1
Query: 133 DLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 297
++ + +VG L + ++ + FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 298 SVRGLDGT 321
++ ++G+
Sbjct: 63 AIEEMNGS 70
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +1
Query: 139 SCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 303
S ++V + ++++ + + FS+YG + V V + P GFA+V F +AE ++
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 304 RGLD 315
L+
Sbjct: 80 LELN 83
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +1
Query: 94 FQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRN--VWVARN--PPGFA 261
F+L+ K+ R + +YV NL + ++ ++FS++G I + V V N G
Sbjct: 208 FELE-KIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVG 266
Query: 262 FVEFEDPRDAEDSVRGLDG 318
FVEF +A ++ ++G
Sbjct: 267 FVEFSTSEEASKAMLKMNG 285
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNP 249
V+VGNL K I K FSK+G + +V + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 312
+YV L T + ++ F+K G + + ++ P GFAFV +DAE ++ L
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 313 D 315
+
Sbjct: 134 N 134
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 312
+YV L T + ++ F+K G + + ++ P GFAFV +DAE ++ L
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 313 D 315
+
Sbjct: 133 N 133
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/67 (22%), Positives = 37/67 (55%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 327
++VG + + ++ ++ +F ++G + +V + FV++ + AE ++ L+GT+
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR-CGFVQYANRACAEQALSVLNGTQL 338
Query: 328 CGTRIRV 348
G IR+
Sbjct: 339 GGQSIRL 345
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 208 KYGNIRNVWVARN-PPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 363
K+G +V V + P G V F+D RDA+ + ++G +I + +G
Sbjct: 439 KHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASLDDG 491
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWV----ARNPPGFAFVEFEDPRDAEDSVRGL 312
K+Y+ NL S +I ++FS+ G+++ + + G A V F DA +V+
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 313 DGTRCCGTRIRVEM 354
+ + G +++E+
Sbjct: 169 NNVQLDGKLMKIEI 182
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Frame = +1
Query: 79 IFIHPFQLKTKMSRYREWDLSC--KVYVGNLG---TNASKYEIXKIF----SKYGNIRNV 231
IF P ++ + + D S ++VG+L T+A+ ++ F S Y + R +
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVM 184
Query: 232 WVARN--PPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIR 345
W + GF FV F + +DA+ ++ ++G +IR
Sbjct: 185 WDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 224
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 291
VYVGNL ++ ++ ++F G I V V R+ GF FV + +A
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNTHDEA 323
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +1
Query: 127 EWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +1
Query: 127 EWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +1
Query: 127 EWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 282
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 312
V V NL + ++ ++F +G + VA + GF FV F DA+ ++ L
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 313 DGTRCCGTRIRVEMS 357
+G +RVE S
Sbjct: 236 NGYGYDNLILRVEWS 250
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 294
K+++G + + ++ + + FS +G + + ++ GF FV F DP AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 294
K+++G + + ++ + + FS +G + + ++ GF FV F DP AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-PPG----FAFVEFEDPRDAEDSVRGL 312
++V L ++ IFS++G + + V R+ G +AF+EFE+ E + +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 313 DGTRCCGTRIRVEMS 357
D RI V+ S
Sbjct: 305 DNALIDDRRIHVDFS 319
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDA 291
KV+VG L + + F +YG+I V + G+ FV F DP A
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
>At1g78410.1 68414.m09137 VQ motif-containing protein contains
PF05678: VQ motif
Length = 108
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 499 VIVNGGEKESDGELKATVVETLTGRESMIGGGDYD 395
V +N E+D TVV+ LTG+ +++ G +D
Sbjct: 15 VFINTQYVETDARSFKTVVQELTGKNAIVAAGPFD 49
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDA 291
KV+VG L + + F +YG I V + G+ FV F DP A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVRG 309
+++VG L ++ +I ++ +G +R + + N G+AF ++DP + +
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 310 LDGTR 324
L+G +
Sbjct: 436 LNGIK 440
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAEDSVRGLDG 318
VYV ++ ++ ++ +F G + + + + FAF+EF D A ++R G
Sbjct: 139 VYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALR-KSG 197
Query: 319 TRCCGTRIRVEMS 357
T IRV MS
Sbjct: 198 TMFGSHPIRVFMS 210
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 274 EDPRDAEDSVRGLDGTRC--CGTRIRVE 351
ED RDAED++R LD G R+RVE
Sbjct: 2 EDERDAEDAIRALDRFEFGRKGRRLRVE 29
>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase (RKL1),
Arabidopsis thaliana, EMBL:AF084034
Length = 660
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = -3
Query: 328 SSVFHQVHEQSLQHHGGLRILQMQIRADFELPIRYVCYRI 209
+ H +H+ S + HG L+ + + DFE + C +
Sbjct: 494 AQALHYIHQSSAKFHGNLKSTNILLGHDFEACVTDYCLSV 533
>At1g60095.1 68414.m06771 jacalin lectin family protein contains
similarity to myrosinase-binding protein homolog
[Arabidopsis thaliana] GI:2997767;
Length = 531
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 211 YGNIRNVWVARNPPGFAFVEFEDPRDAE 294
+ IRN+++ N G AFV+F +D++
Sbjct: 404 FDGIRNIYIGHNKMGIAFVKFLYDKDSQ 431
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKY---GNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 312
++VG+L + + FS Y + R +W + GF FV F + +DA+ ++ +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 313 DGTRCCGTRIR 345
G +IR
Sbjct: 201 TGKWLGSRQIR 211
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGN--IRNVWVARNPPGFAFVEF 273
VYVGNL S+ ++ + F G I V V R+ GF FV +
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRY 304
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 312
+YVG L ++ + F +G+I++V + F FV F + DA ++ +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 313 DGTRCCGTRIRV 348
DG G + V
Sbjct: 75 DGAELYGRVLTV 86
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +1
Query: 82 FIHPFQLKTKMSRYREWDLSCKVYVGNLGTNASKYEIXKIFSKYGNIRNVWVARN----- 246
F+ P Q +++ + + S ++V L + + F+++G + + V +
Sbjct: 37 FLSP-QAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGY 95
Query: 247 PPGFAFVEFEDPRDAEDSVRGLDG 318
GF FV + D+ + G+DG
Sbjct: 96 SKGFGFVRYATLEDSAKGIAGMDG 119
>At4g13330.1 68417.m02083 expressed protein
Length = 428
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 352 FRHESWCHSSVFHQVHEQSLQHHGGLRILQMQIRAD 245
F H W SSVF + ++L H G ++ + AD
Sbjct: 295 FPHSLWDSSSVFMKALSKTLHHEHGTLVVNLHSDAD 330
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNI 222
K+YV N+G ++ FSK+G I
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEI 271
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNI 222
K+YV N+G ++ FSK+G I
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEI 271
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 145 KVYVGNLGTNASKYEIXKIFSKYGNI 222
K+YV N+G ++ FSK+G I
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEI 271
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +1
Query: 148 VYVGNLGTNASKYEIXKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRGL 312
++VG L + EI + S+YG ++ + V+ G+ VEF D A G+
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 313 DG 318
+G
Sbjct: 264 NG 265
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,215,180
Number of Sequences: 28952
Number of extensions: 225275
Number of successful extensions: 904
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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