Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F14
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_20595| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_52147| Best HMM Match : EGF (HMM E-Value=0)                         28   7.6  
SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   7.6  

>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 756

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 20/24 (83%), Positives = 24/24 (100%)
 Frame = +3

Query: 189 IEISDDEDETHPNIDTPSLFRWRH 260
           +++SDDED+THPNIDTPSLFRWRH
Sbjct: 623 MQVSDDEDDTHPNIDTPSLFRWRH 646


>SB_20595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 99  SKFKKKLSWFQETRKKSENSFTFXD 25
           +KFK++L WF ET  ++  + TF D
Sbjct: 153 AKFKQRLDWFTETHVQATKTSTFMD 177


>SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 228 CLDGSRLHRRKFRYLSICCSRPLFEKLDLVIHFDNIQIF*TLASKFKKKLSWFQETRKKS 49
           CLD   +  R FR + IC      +K+ +V  F   +     +S+ K+KL     TR + 
Sbjct: 767 CLDNENVSDRVFRQMLICLKEEWMDKVKVVFKFAKSR---PTSSEDKEKLLRVLGTRPED 823

Query: 48  E 46
           E
Sbjct: 824 E 824


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 93  FKKKLSWFQETRKKSENSFTFXDVV 19
           FKK+L WF E RK   +   + +VV
Sbjct: 145 FKKRLDWFLENRKDLASQVRYIEVV 169


>SB_52147| Best HMM Match : EGF (HMM E-Value=0)
          Length = 364

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 239 IIVSMAAPGPCGTHGXATPRE 301
           IIV   +  PCG HG   PR+
Sbjct: 280 IIVDPCSANPCGNHGMCVPRD 300


>SB_11986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 421

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 360 FSWXRLDVVGFLSFFAP 310
           FSW  L V  F+SFFAP
Sbjct: 245 FSWLPLHVFSFISFFAP 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,081,438
Number of Sequences: 59808
Number of extensions: 248003
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)