Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F14
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000266-4|ABB51177.1|  403|Caenorhabditis elegans Hypothetical ...    87   1e-17
AF000266-5|AAC71172.1|  370|Caenorhabditis elegans Hypothetical ...    86   2e-17
AC024880-6|AAF60912.1|  547|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AF000266-4|ABB51177.1|  403|Caenorhabditis elegans Hypothetical
           protein W08F4.8b protein.
          Length = 403

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 52/167 (31%), Positives = 70/167 (41%)
 Frame = +3

Query: 153 SQTMVDYSKWKDIEISDDEDETHPNIDTPSLFRWRHXXXXXXXXXXXXXXXXXXXXXXXX 332
           S+  +DYSKWKDIE+SDDED+THPNIDTPSLFRWRH                        
Sbjct: 32  SKMPIDYSKWKDIEVSDDEDDTHPNIDTPSLFRWRHQARLERMAEKKMEQEKIDKEKGTT 91

Query: 333 XXXLTXTXKKISEADADSPNLNSLKKTXXXXXXXXXXXXXXXXXXXXXXXHTPWNVXTIS 512
              +    KK+  A AD  + + ++K                          PWNV TI 
Sbjct: 92  SKKMEELEKKL--AAADVTDKSDIQKQIDEVKAQEEAWRKKEAELEEKERLEPWNVDTIG 149

Query: 513 EPGFNKTVINTKALXPSNENLTEXEKEAKMNKFITXNEKFLKQFGLL 653
              F+ + IN           T+ E    M+ F   +E  L++  +L
Sbjct: 150 HEAFSTSRINKITEKKPQAPKTDEEDTHAMSTFFETHESLLEKMAVL 196


>AF000266-5|AAC71172.1|  370|Caenorhabditis elegans Hypothetical
           protein W08F4.8a protein.
          Length = 370

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 51/163 (31%), Positives = 68/163 (41%)
 Frame = +3

Query: 165 VDYSKWKDIEISDDEDETHPNIDTPSLFRWRHXXXXXXXXXXXXXXXXXXXXXXXXXXXL 344
           +DYSKWKDIE+SDDED+THPNIDTPSLFRWRH                           +
Sbjct: 3   IDYSKWKDIEVSDDEDDTHPNIDTPSLFRWRHQARLERMAEKKMEQEKIDKEKGTTSKKM 62

Query: 345 TXTXKKISEADADSPNLNSLKKTXXXXXXXXXXXXXXXXXXXXXXXHTPWNVXTISEPGF 524
               KK+  A AD  + + ++K                          PWNV TI    F
Sbjct: 63  EELEKKL--AAADVTDKSDIQKQIDEVKAQEEAWRKKEAELEEKERLEPWNVDTIGHEAF 120

Query: 525 NKTVINTKALXPSNENLTEXEKEAKMNKFITXNEKFLKQFGLL 653
           + + IN           T+ E    M+ F   +E  L++  +L
Sbjct: 121 STSRINKITEKKPQAPKTDEEDTHAMSTFFETHESLLEKMAVL 163


>AC024880-6|AAF60912.1|  547|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.4 protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 153 SQTMVDYSKWKDIEISDDEDETHPNIDTP 239
           S+   D  + + I++ DD+DE  PNI  P
Sbjct: 456 SEAFDDKDEQEVIDLDDDDDEPDPNIQQP 484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,456,680
Number of Sequences: 27780
Number of extensions: 197034
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)