Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F12
(648 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9BZS6 Cluster: SSU72 RNA polymerase II CTD phosphatase... 219 5e-56
UniRef50_Q22453 Cluster: Putative uncharacterized protein; n=2; ... 192 5e-48
UniRef50_UPI00005A3F7F Cluster: PREDICTED: similar to Ssu72 RNA ... 171 9e-42
UniRef50_Q4RXN5 Cluster: Chromosome 11 SCAF14979, whole genome s... 170 3e-41
UniRef50_UPI0000F31DDA Cluster: UPI0000F31DDA related cluster; n... 169 7e-41
UniRef50_O42868 Cluster: RNA polymerase II subunit A C-terminal ... 168 1e-40
UniRef50_P53538 Cluster: RNA polymerase II subunit A C-terminal ... 160 3e-38
UniRef50_Q2QX64 Cluster: Ssu72-like protein, expressed; n=3; Ory... 142 5e-33
UniRef50_Q8SRQ6 Cluster: SSU72 PROTEIN HOMOLOG; n=1; Encephalito... 140 4e-32
UniRef50_Q558Z3 Cluster: Putative uncharacterized protein; n=1; ... 138 8e-32
UniRef50_Q6BYP7 Cluster: RNA polymerase II subunit A C-terminal ... 135 8e-31
UniRef50_Q4WHY5 Cluster: RNA polymerase II subunit A C-terminal ... 125 1e-27
UniRef50_Q00U02 Cluster: Protein involved in transcription start... 118 2e-25
UniRef50_UPI00004982BE Cluster: conserved hypothetical protein; ... 114 2e-24
UniRef50_Q5SV18 Cluster: SSU72 RNA polymerase II CTD phosphatase... 104 2e-21
UniRef50_Q9H933 Cluster: CDNA FLJ13048 fis, clone NT2RP3001399, ... 104 2e-21
UniRef50_A2FVC5 Cluster: SSU72 protein-related protein; n=1; Tri... 100 6e-20
UniRef50_UPI0000F20D86 Cluster: PREDICTED: hypothetical protein;... 99 1e-19
UniRef50_A5GAI1 Cluster: Putative uncharacterized protein precur... 36 1.1
UniRef50_Q93GC2 Cluster: GlyA; n=1; Xanthomonas campestris|Rep: ... 34 2.6
UniRef50_Q6W1J7 Cluster: Transcriptional regulatory protein; n=1... 33 4.5
UniRef50_A7AZY7 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
>UniRef50_Q9BZS6 Cluster: SSU72 RNA polymerase II CTD phosphatase
homolog; n=70; Eukaryota|Rep: SSU72 RNA polymerase II
CTD phosphatase homolog - Homo sapiens (Human)
Length = 194
Score = 219 bits (535), Expect = 5e-56
Identities = 99/155 (63%), Positives = 120/155 (77%)
Frame = +3
Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
S L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD+
Sbjct: 4 SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63
Query: 360 IYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWF 539
+YNDL+ KDK YTQNG+LHMLDRN+ IKP PE+FQ C + FD+I+TCE R YDQV+E
Sbjct: 64 MYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDL 123
Query: 540 GSXRSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
S QPVHVVN+DIQ NHEEAT+GAFLI ++
Sbjct: 124 NSREQETCQPVHVVNVDIQDNHEEATLGAFLICEL 158
>UniRef50_Q22453 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 235
Score = 192 bits (469), Expect = 5e-48
Identities = 86/156 (55%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Frame = +3
Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFG-VLYD 356
S L AV CSSNMNRSMEAH L K+GFN++SYG+G +VK+PG + D+PNCYEFG Y+
Sbjct: 43 SKLRFAVSCSSNMNRSMEAHGILKKRGFNIESYGSGNQVKMPGPTVDKPNCYEFGPTTYE 102
Query: 357 EIYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEW 536
+IY DL KD + YTQNGLLHM+DRNR IK P++FQ FD+++ E R +DQV+++
Sbjct: 103 DIYADLTNKDLHLYTQNGLLHMVDRNRRIKSRPQRFQAETREFDIVLCLEERVFDQVVDF 162
Query: 537 FGSXRSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
PVHV+NIDI+ N EEAT GAF ++D+
Sbjct: 163 LNRSVGKSGNPVHVINIDIEDNAEEATFGAFFVADL 198
>UniRef50_UPI00005A3F7F Cluster: PREDICTED: similar to Ssu72 RNA
polymerase II CTD phosphatase homolog; n=3;
Laurasiatheria|Rep: PREDICTED: similar to Ssu72 RNA
polymerase II CTD phosphatase homolog - Canis familiaris
Length = 246
Score = 171 bits (417), Expect = 9e-42
Identities = 81/152 (53%), Positives = 105/152 (69%)
Frame = +3
Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
S L VAVVCSSNMNRSMEAH L K+GF V+S+G +VKLPG + P Y+F Y +
Sbjct: 29 SPLRVAVVCSSNMNRSMEAHDILQKRGFCVRSFGVARQVKLPGLIRNCPVLYDFSTTYKQ 88
Query: 360 IYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWF 539
+Y DL K++ Y+ NG+L +L RN+ IKP PE+FQ C++ FDVI TCE R YD+V++
Sbjct: 89 MYKDLWRKNRECYSSNGILQLLGRNQRIKPHPERFQECSDPFDVIFTCEERVYDRVVQDL 148
Query: 540 GSXRSIYNQPVHVVNIDIQXNHEEATIGAFLI 635
+ QP+HVVN+DI EEAT+GAFLI
Sbjct: 149 CAREQATFQPLHVVNVDIVDTLEEATLGAFLI 180
>UniRef50_Q4RXN5 Cluster: Chromosome 11 SCAF14979, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 11
SCAF14979, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 231
Score = 170 bits (413), Expect = 3e-41
Identities = 74/116 (63%), Positives = 92/116 (79%)
Frame = +3
Query: 186 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 365
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F Y ++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPTPDKPNVYDFKTTYVQMY 65
Query: 366 NDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIE 533
NDL+ KDK YTQNG+LHMLDRN+ IK PE+FQ C +RFD+++TCE R YDQV+E
Sbjct: 66 NDLVRKDKELYTQNGILHMLDRNKRIKSKPERFQNCKDRFDLVVTCEERVYDQVVE 121
Score = 50.8 bits (116), Expect = 3e-05
Identities = 20/27 (74%), Positives = 25/27 (92%)
Frame = +3
Query: 564 QPVHVVNIDIQXNHEEATIGAFLISDM 644
QPVHV+N+DIQ NHEEAT+GAFLI ++
Sbjct: 169 QPVHVINVDIQDNHEEATLGAFLICEL 195
>UniRef50_UPI0000F31DDA Cluster: UPI0000F31DDA related cluster; n=1;
Bos taurus|Rep: UPI0000F31DDA UniRef100 entry - Bos
Taurus
Length = 218
Score = 169 bits (410), Expect = 7e-41
Identities = 75/151 (49%), Positives = 102/151 (67%)
Frame = +3
Query: 192 VAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYND 371
VAVVC SNMNRSMEAH L +KGF V+S+G G +V+LPG + + P Y F Y+E+ D
Sbjct: 11 VAVVCMSNMNRSMEAHRILRRKGFRVRSFGAGSRVRLPGRARNLPVVYNFSTTYEEMRKD 70
Query: 372 LMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWFGSXR 551
L+ KD+ Y NG+LH+L RN IKP PE+FQ C + FDVI TC Y++V+E
Sbjct: 71 LVRKDRQRYNSNGILHILGRNERIKPRPERFQECRDHFDVIFTCAESVYNKVVEELWVRE 130
Query: 552 SIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
QPVHV+N+D+ N E+AT+G+F+I ++
Sbjct: 131 QETFQPVHVINVDMADNLEDATLGSFIICEL 161
>UniRef50_O42868 Cluster: RNA polymerase II subunit A C-terminal
domain phosphatase ssu72; n=7; Fungi/Metazoa group|Rep:
RNA polymerase II subunit A C-terminal domain
phosphatase ssu72 - Schizosaccharomyces pombe (Fission
yeast)
Length = 197
Score = 168 bits (408), Expect = 1e-40
Identities = 76/156 (48%), Positives = 106/156 (67%)
Frame = +3
Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
++L ++V+C+SN NRSMEAH L G+ V S+GTG V+LPG S D+PN Y+FG YDE
Sbjct: 5 TNLQISVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDE 64
Query: 360 IYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWF 539
IY +L +D YT NGLL MLDRNR IK P ++Q + ++++ITCE R YD + E
Sbjct: 65 IYKELEAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQDSIYNIVITCEERCYDAICEDL 124
Query: 540 GSXRSIYNQPVHVVNIDIQXNHEEATIGAFLISDMV 647
N+PV+++N+DI+ NHEEA++G I D+V
Sbjct: 125 YRRGETLNRPVYLINVDIKDNHEEASVGGKAILDLV 160
>UniRef50_P53538 Cluster: RNA polymerase II subunit A C-terminal
domain phosphatase SSU72; n=7; Saccharomycetales|Rep:
RNA polymerase II subunit A C-terminal domain
phosphatase SSU72 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 206
Score = 160 bits (388), Expect = 3e-38
Identities = 75/155 (48%), Positives = 101/155 (65%)
Frame = +3
Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
S+L VC+SN NRSME+H L + G+NV SYGTG V+LPG S D+PN Y FG Y++
Sbjct: 7 SNLKFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYSFGTPYND 66
Query: 360 IYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWF 539
IYNDL+ + + Y NGLL MLDRNR +K PEK+Q + FD + TCE R +D V E
Sbjct: 67 IYNDLLSQSADRYKSNGLLQMLDRNRRLKKAPEKWQESTKVFDFVFTCEERCFDAVCEDL 126
Query: 540 GSXRSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
+ N+ VHV+N+DI+ + E A IG+ I ++
Sbjct: 127 MNRGGKLNKIVHVINVDIKDDDENAKIGSKAILEL 161
>UniRef50_Q2QX64 Cluster: Ssu72-like protein, expressed; n=3; Oryza
sativa|Rep: Ssu72-like protein, expressed - Oryza sativa
subsp. japonica (Rice)
Length = 200
Score = 142 bits (345), Expect = 5e-33
Identities = 70/152 (46%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
Frame = +3
Query: 195 AVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDL 374
A+VCSSNMNRSMEAH+ L + G +V SYGTG VKLPG S PN Y+FG Y+ IY+DL
Sbjct: 12 AMVCSSNMNRSMEAHSLLGRAGLDVASYGTGTHVKLPGPSLHEPNVYDFGTPYNVIYDDL 71
Query: 375 MEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQ--VCNERFDVIITCEXRXYDQVIEWFGSX 548
KD + Y +NGLL ML RN +K P+++Q + FDVI + E R +D +++ +
Sbjct: 72 RRKDPDLYKRNGLLPMLKRNTSVKLAPQRWQDNAGDGLFDVIFSFEERVFDLIVDDMHNR 131
Query: 549 RSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
+ ++N+D++ NHEEA +GA L D+
Sbjct: 132 EQRMLKNALIINMDVKDNHEEAGVGAKLALDL 163
>UniRef50_Q8SRQ6 Cluster: SSU72 PROTEIN HOMOLOG; n=1;
Encephalitozoon cuniculi|Rep: SSU72 PROTEIN HOMOLOG -
Encephalitozoon cuniculi
Length = 193
Score = 140 bits (338), Expect = 4e-32
Identities = 65/152 (42%), Positives = 96/152 (63%)
Frame = +3
Query: 192 VAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYND 371
+AV C+ N NRSM+ H L KKG VKS+GT +KLPG + D+PN Y FGV Y +IY+D
Sbjct: 6 LAVTCAMNQNRSMQTHDLLAKKGIPVKSFGTNPVIKLPGETMDKPNVYNFGVTYQQIYDD 65
Query: 372 LMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWFGSXR 551
L K++++Y ++G+L++L+RN +K PE F +E FD++ITCE R + + E++
Sbjct: 66 LCMKNEDHYRESGILYLLERNMGVKERPENFFQRSEDFDLVITCEERVFTSIFEYYADAP 125
Query: 552 SIYNQPVHVVNIDIQXNHEEATIGAFLISDMV 647
S Q +VN DI+ +A GA I + V
Sbjct: 126 SC-TQCFFMVNFDIRDTPSDAIAGAQEILEFV 156
>UniRef50_Q558Z3 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 214
Score = 138 bits (335), Expect = 8e-32
Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Frame = +3
Query: 192 VAVVCSSNMNRSMEAHAFLVKKGF-NVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYN 368
+A+VC+SN NRS+EAH VK GF N++S+GT KLPG S +PN + FG Y EIY
Sbjct: 24 IAMVCASNQNRSLEAHHLFVKNGFKNIRSFGTSAHCKLPGPSIHQPNIFSFGTPYQEIYT 83
Query: 369 DLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNE-RFDVIITCEXRXYDQVIEWF-- 539
L +D+ Y +NGLL+ML+RN +K PEK+Q + +F+++ T + R YD VIE
Sbjct: 84 SLKNQDQELYIRNGLLNMLERNISVKLAPEKWQEEQQSKFEIVYTFDQRVYDAVIEDLLQ 143
Query: 540 GSXRSIYNQPVHVVNIDIQXNHEEATIGA 626
S QPVH++N+ ++ HEEA GA
Sbjct: 144 RDVSSSLLQPVHIINLQVKDTHEEAVGGA 172
>UniRef50_Q6BYP7 Cluster: RNA polymerase II subunit A C-terminal
domain phosphatase SSU72; n=4; Saccharomycetales|Rep:
RNA polymerase II subunit A C-terminal domain
phosphatase SSU72 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 223
Score = 135 bits (327), Expect = 8e-31
Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 10/156 (6%)
Frame = +3
Query: 186 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 365
L + VC++N NRSME+H L G+NV+S+GTG V+LPG D+PN YEFG YD+IY
Sbjct: 6 LKICTVCAANNNRSMESHKQLKDAGYNVRSFGTGSAVRLPGPLVDKPNVYEFGTPYDDIY 65
Query: 366 NDLMEKD-KNYYTQNGLLHMLDRNRXIKPCPEKF--QVCNERFDVIITCEXRXYDQVIEW 536
DL ++ Y NGL+ M++RNR IK PEK+ +FD++ITCE R +D V++
Sbjct: 66 RDLTSQEYHKMYESNGLIRMINRNRHIKRAPEKWHNNASAGKFDLVITCEERCFDLVLDD 125
Query: 537 F-------GSXRSIYNQPVHVVNIDIQXNHEEATIG 623
+ Q VH++NIDI+ ++E A IG
Sbjct: 126 LMVRLVNKDQADTEIKQAVHIINIDIKDDYENAVIG 161
>UniRef50_Q4WHY5 Cluster: RNA polymerase II subunit A C-terminal
domain phosphatase ssu72; n=16; Pezizomycotina|Rep: RNA
polymerase II subunit A C-terminal domain phosphatase
ssu72 - Aspergillus fumigatus (Sartorya fumigata)
Length = 287
Score = 125 bits (301), Expect = 1e-27
Identities = 74/177 (41%), Positives = 98/177 (55%), Gaps = 24/177 (13%)
Frame = +3
Query: 186 LYVAVVCSSNMNRSMEAHAFL--VKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVL-YD 356
L VC+SN NRSMEAH L F V S+GTG V+LPG S +PN Y F Y
Sbjct: 53 LKFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSYS 112
Query: 357 EIYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQ---------------------VC 473
++Y++L+ KD+ Y NGLL+MLDRNR +K PE+FQ
Sbjct: 113 QMYDELLAKDERLYRNNGLLNMLDRNRNLKWGPERFQDWVPGMPRVDHVSKGDKGALGTE 172
Query: 474 NERFDVIITCEXRXYDQVIEWFGSXRSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
DVIITCE R +D V++ + + N+PVHV N+DI+ NHEEA +G I ++
Sbjct: 173 GGTVDVIITCEERCWDAVVDDLMNKGAALNRPVHVFNVDIRDNHEEALVGGKAILEL 229
>UniRef50_Q00U02 Cluster: Protein involved in transcription start
site selection; n=2; Ostreococcus|Rep: Protein involved
in transcription start site selection - Ostreococcus
tauri
Length = 205
Score = 118 bits (283), Expect = 2e-25
Identities = 65/155 (41%), Positives = 93/155 (60%), Gaps = 7/155 (4%)
Frame = +3
Query: 165 SNFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEF- 341
S+ S A VC++N NRSMEAH L++ GF+VKSYG +VKLPGAS D PN Y+F
Sbjct: 3 SSTSRSGYRYACVCAANFNRSMEAHRVLLENGFDVKSYGAASRVKLPGASRDDPNVYDFD 62
Query: 342 GVLYDEIYNDLMEKDKNY---YTQNGLLHMLDRNRXIKPCPEKFQVCNER---FDVIITC 503
G Y+EI DL + ++ Y + G+ ML RN IK CPE+++ ER FDVI+
Sbjct: 63 GTSYEEILRDLRSQSEDLVKNYEERGMFDMLVRNAKIKRCPERWKTHRERGETFDVIVCF 122
Query: 504 EXRXYDQVIEWFGSXRSIYNQPVHVVNIDIQXNHE 608
E R +D V+ + + + VVN+D++ ++E
Sbjct: 123 EERVFDLVVMDLRAAGGARDAAL-VVNLDVRDSYE 156
>UniRef50_UPI00004982BE Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 201
Score = 114 bits (275), Expect = 2e-24
Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 2/154 (1%)
Frame = +3
Query: 192 VAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYND 371
+AV+C SN NRS+ AH L + G+NV S+GTG LPGA+ R ++FG+ Y +I N
Sbjct: 15 IAVICRSNQNRSISAHCRLKQLGYNVSSFGTGVYTILPGAT--RNFGFQFGIPYKDIKNS 72
Query: 372 LMEKDKN--YYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWFGS 545
L + + + YY +N + MLDRN +K PEKFQ C + F++IIT + + V+E+F S
Sbjct: 73 LPKDEASVEYYRKNKIYQMLDRNANLKSAPEKFQDCKKEFNIIITLDYSVFMDVLEYFDS 132
Query: 546 XRSIYNQPVHVVNIDIQXNHEEATIGAFLISDMV 647
S +V N+ + + A GA +S+ +
Sbjct: 133 RESSTGSLCYVFNLTVMDQLDTAEKGAIEVSEFL 166
>UniRef50_Q5SV18 Cluster: SSU72 RNA polymerase II CTD phosphatase
homolog; n=9; Euteleostomi|Rep: SSU72 RNA polymerase II
CTD phosphatase homolog - Homo sapiens (Human)
Length = 111
Score = 104 bits (250), Expect = 2e-21
Identities = 47/75 (62%), Positives = 57/75 (76%)
Frame = +3
Query: 420 MLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWFGSXRSIYNQPVHVVNIDIQX 599
MLDRN+ IKP PE+FQ C + FD+I+TCE R YDQV+E S QPVHVVN+DIQ
Sbjct: 1 MLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQD 60
Query: 600 NHEEATIGAFLISDM 644
NHEEAT+GAFLI ++
Sbjct: 61 NHEEATLGAFLICEL 75
>UniRef50_Q9H933 Cluster: CDNA FLJ13048 fis, clone NT2RP3001399,
weakly similar to SSU72 PROTEIN (Ssu72 RNA polymerase II
CTD phosphatase homolog (Yeast), isoform CRA_a); n=1;
Homo sapiens|Rep: CDNA FLJ13048 fis, clone NT2RP3001399,
weakly similar to SSU72 PROTEIN (Ssu72 RNA polymerase II
CTD phosphatase homolog (Yeast), isoform CRA_a) - Homo
sapiens (Human)
Length = 153
Score = 104 bits (249), Expect = 2e-21
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = +3
Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
S L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD+
Sbjct: 4 SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63
Query: 360 IYNDLMEKDKNYY 398
+YNDL+ KDK Y
Sbjct: 64 MYNDLLRKDKELY 76
>UniRef50_A2FVC5 Cluster: SSU72 protein-related protein; n=1;
Trichomonas vaginalis G3|Rep: SSU72 protein-related
protein - Trichomonas vaginalis G3
Length = 204
Score = 99.5 bits (237), Expect = 6e-20
Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 5/152 (3%)
Frame = +3
Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
+ L A VC+SN+NRSME H L + GFNV SYGT + VK+PGAS + P ++FG Y E
Sbjct: 5 NQLAFACVCASNVNRSMEGHRVLKEAGFNVSSYGTNDYVKMPGAS-NVPLQFDFGATYKE 63
Query: 360 IYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQ-----VCNERFDVIITCEXRXYDQ 524
I + + ++ YY + GL+ ML + K PE++ + FDVI T + D+
Sbjct: 64 ILSKMESENNQYYEEQGLIKMLRDDANTKEKPERWSSTFNPATLKYFDVIFTYDNNVMDR 123
Query: 525 VIEWFGSXRSIYNQPVHVVNIDIQXNHEEATI 620
V+ F + Q HVVNI + + A +
Sbjct: 124 VLNEFRENGNRTFQISHVVNIQTPDSRDNAIL 155
>UniRef50_UPI0000F20D86 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 228
Score = 98.7 bits (235), Expect = 1e-19
Identities = 43/68 (63%), Positives = 54/68 (79%)
Frame = +3
Query: 186 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 365
L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F Y+++Y
Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMY 65
Query: 366 NDLMEKDK 389
NDL+ KDK
Sbjct: 66 NDLVRKDK 73
>UniRef50_A5GAI1 Cluster: Putative uncharacterized protein
precursor; n=1; Geobacter uraniumreducens Rf4|Rep:
Putative uncharacterized protein precursor - Geobacter
uraniumreducens Rf4
Length = 195
Score = 35.5 bits (78), Expect = 1.1
Identities = 29/95 (30%), Positives = 40/95 (42%)
Frame = +3
Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
SD AV SS S + L+ + SYG G + L GA A P F L+D
Sbjct: 85 SDTNGAVSSSSGPIVSGISEEVLLSSANFIGSYGNGSHIDLSGAVASMPGNDFFDGLFDG 144
Query: 360 IYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKF 464
+++D + D +G H D N + P P F
Sbjct: 145 LFDDFFDNDHGPGNNDGGGH--DNNAPV-PEPASF 176
>UniRef50_Q93GC2 Cluster: GlyA; n=1; Xanthomonas campestris|Rep:
GlyA - Xanthomonas campestris
Length = 374
Score = 34.3 bits (75), Expect = 2.6
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +3
Query: 252 KKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDR 431
+ GF VK Y TGE ++PGA P FG E +L K+ L H
Sbjct: 157 RPGFVVKDYDTGECWRVPGACPGYPENSTFGC--GESVAELQATRKSQIDPRRLFHNQQE 214
Query: 432 NRXIKPCPEKFQVCN-ERFDVIITCEXRXY 518
K C + Q+ N + D++I R Y
Sbjct: 215 CIARKSCELRCQMDNCQWMDLVIPAFTRPY 244
>UniRef50_Q6W1J7 Cluster: Transcriptional regulatory protein; n=1;
Rhizobium sp. NGR234|Rep: Transcriptional regulatory
protein - Rhizobium sp. (strain NGR234)
Length = 366
Score = 33.5 bits (73), Expect = 4.5
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +3
Query: 168 NFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGV 347
N K+S+ +VA +CS N+ + A +K+G +Y G+K L AS DR Y G+
Sbjct: 175 NNKLSNEWVASICSDNVEGGRQIAALFLKRGARRFAYIGGKKGNL--ASEDRFAGYLSGL 232
Query: 348 LYDEI 362
+ + I
Sbjct: 233 MQNGI 237
>UniRef50_A7AZY7 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 305
Score = 33.5 bits (73), Expect = 4.5
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 333 YEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXR 512
YEF V + Y D+++ KN+ ++ G+L++ + NR K + F CN F ++ C
Sbjct: 118 YEFAVHETKTY-DVIQDVKNFKSEIGILYVNEFNR--KVLTKLFHECNLEFHELLKCSIY 174
Query: 513 XY 518
Y
Sbjct: 175 VY 176
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 536,292,400
Number of Sequences: 1657284
Number of extensions: 9250846
Number of successful extensions: 19487
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 18937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19466
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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