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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F12
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9BZS6 Cluster: SSU72 RNA polymerase II CTD phosphatase...   219   5e-56
UniRef50_Q22453 Cluster: Putative uncharacterized protein; n=2; ...   192   5e-48
UniRef50_UPI00005A3F7F Cluster: PREDICTED: similar to Ssu72 RNA ...   171   9e-42
UniRef50_Q4RXN5 Cluster: Chromosome 11 SCAF14979, whole genome s...   170   3e-41
UniRef50_UPI0000F31DDA Cluster: UPI0000F31DDA related cluster; n...   169   7e-41
UniRef50_O42868 Cluster: RNA polymerase II subunit A C-terminal ...   168   1e-40
UniRef50_P53538 Cluster: RNA polymerase II subunit A C-terminal ...   160   3e-38
UniRef50_Q2QX64 Cluster: Ssu72-like protein, expressed; n=3; Ory...   142   5e-33
UniRef50_Q8SRQ6 Cluster: SSU72 PROTEIN HOMOLOG; n=1; Encephalito...   140   4e-32
UniRef50_Q558Z3 Cluster: Putative uncharacterized protein; n=1; ...   138   8e-32
UniRef50_Q6BYP7 Cluster: RNA polymerase II subunit A C-terminal ...   135   8e-31
UniRef50_Q4WHY5 Cluster: RNA polymerase II subunit A C-terminal ...   125   1e-27
UniRef50_Q00U02 Cluster: Protein involved in transcription start...   118   2e-25
UniRef50_UPI00004982BE Cluster: conserved hypothetical protein; ...   114   2e-24
UniRef50_Q5SV18 Cluster: SSU72 RNA polymerase II CTD phosphatase...   104   2e-21
UniRef50_Q9H933 Cluster: CDNA FLJ13048 fis, clone NT2RP3001399, ...   104   2e-21
UniRef50_A2FVC5 Cluster: SSU72 protein-related protein; n=1; Tri...   100   6e-20
UniRef50_UPI0000F20D86 Cluster: PREDICTED: hypothetical protein;...    99   1e-19
UniRef50_A5GAI1 Cluster: Putative uncharacterized protein precur...    36   1.1  
UniRef50_Q93GC2 Cluster: GlyA; n=1; Xanthomonas campestris|Rep: ...    34   2.6  
UniRef50_Q6W1J7 Cluster: Transcriptional regulatory protein; n=1...    33   4.5  
UniRef50_A7AZY7 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  

>UniRef50_Q9BZS6 Cluster: SSU72 RNA polymerase II CTD phosphatase
           homolog; n=70; Eukaryota|Rep: SSU72 RNA polymerase II
           CTD phosphatase homolog - Homo sapiens (Human)
          Length = 194

 Score =  219 bits (535), Expect = 5e-56
 Identities = 99/155 (63%), Positives = 120/155 (77%)
 Frame = +3

Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
           S L VAVVCSSN NRSMEAH  L K+GF+V+S+GTG  VKLPG + D+PN Y+F   YD+
Sbjct: 4   SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63

Query: 360 IYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWF 539
           +YNDL+ KDK  YTQNG+LHMLDRN+ IKP PE+FQ C + FD+I+TCE R YDQV+E  
Sbjct: 64  MYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDL 123

Query: 540 GSXRSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
            S      QPVHVVN+DIQ NHEEAT+GAFLI ++
Sbjct: 124 NSREQETCQPVHVVNVDIQDNHEEATLGAFLICEL 158


>UniRef50_Q22453 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 235

 Score =  192 bits (469), Expect = 5e-48
 Identities = 86/156 (55%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
 Frame = +3

Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFG-VLYD 356
           S L  AV CSSNMNRSMEAH  L K+GFN++SYG+G +VK+PG + D+PNCYEFG   Y+
Sbjct: 43  SKLRFAVSCSSNMNRSMEAHGILKKRGFNIESYGSGNQVKMPGPTVDKPNCYEFGPTTYE 102

Query: 357 EIYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEW 536
           +IY DL  KD + YTQNGLLHM+DRNR IK  P++FQ     FD+++  E R +DQV+++
Sbjct: 103 DIYADLTNKDLHLYTQNGLLHMVDRNRRIKSRPQRFQAETREFDIVLCLEERVFDQVVDF 162

Query: 537 FGSXRSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
                     PVHV+NIDI+ N EEAT GAF ++D+
Sbjct: 163 LNRSVGKSGNPVHVINIDIEDNAEEATFGAFFVADL 198


>UniRef50_UPI00005A3F7F Cluster: PREDICTED: similar to Ssu72 RNA
           polymerase II CTD phosphatase homolog; n=3;
           Laurasiatheria|Rep: PREDICTED: similar to Ssu72 RNA
           polymerase II CTD phosphatase homolog - Canis familiaris
          Length = 246

 Score =  171 bits (417), Expect = 9e-42
 Identities = 81/152 (53%), Positives = 105/152 (69%)
 Frame = +3

Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
           S L VAVVCSSNMNRSMEAH  L K+GF V+S+G   +VKLPG   + P  Y+F   Y +
Sbjct: 29  SPLRVAVVCSSNMNRSMEAHDILQKRGFCVRSFGVARQVKLPGLIRNCPVLYDFSTTYKQ 88

Query: 360 IYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWF 539
           +Y DL  K++  Y+ NG+L +L RN+ IKP PE+FQ C++ FDVI TCE R YD+V++  
Sbjct: 89  MYKDLWRKNRECYSSNGILQLLGRNQRIKPHPERFQECSDPFDVIFTCEERVYDRVVQDL 148

Query: 540 GSXRSIYNQPVHVVNIDIQXNHEEATIGAFLI 635
            +      QP+HVVN+DI    EEAT+GAFLI
Sbjct: 149 CAREQATFQPLHVVNVDIVDTLEEATLGAFLI 180


>UniRef50_Q4RXN5 Cluster: Chromosome 11 SCAF14979, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 11
           SCAF14979, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 231

 Score =  170 bits (413), Expect = 3e-41
 Identities = 74/116 (63%), Positives = 92/116 (79%)
 Frame = +3

Query: 186 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 365
           L VAVVCSSN NRSMEAH  L K+GF+V+S+GTG  VKLPG + D+PN Y+F   Y ++Y
Sbjct: 6   LRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPTPDKPNVYDFKTTYVQMY 65

Query: 366 NDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIE 533
           NDL+ KDK  YTQNG+LHMLDRN+ IK  PE+FQ C +RFD+++TCE R YDQV+E
Sbjct: 66  NDLVRKDKELYTQNGILHMLDRNKRIKSKPERFQNCKDRFDLVVTCEERVYDQVVE 121



 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 20/27 (74%), Positives = 25/27 (92%)
 Frame = +3

Query: 564 QPVHVVNIDIQXNHEEATIGAFLISDM 644
           QPVHV+N+DIQ NHEEAT+GAFLI ++
Sbjct: 169 QPVHVINVDIQDNHEEATLGAFLICEL 195


>UniRef50_UPI0000F31DDA Cluster: UPI0000F31DDA related cluster; n=1;
           Bos taurus|Rep: UPI0000F31DDA UniRef100 entry - Bos
           Taurus
          Length = 218

 Score =  169 bits (410), Expect = 7e-41
 Identities = 75/151 (49%), Positives = 102/151 (67%)
 Frame = +3

Query: 192 VAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYND 371
           VAVVC SNMNRSMEAH  L +KGF V+S+G G +V+LPG + + P  Y F   Y+E+  D
Sbjct: 11  VAVVCMSNMNRSMEAHRILRRKGFRVRSFGAGSRVRLPGRARNLPVVYNFSTTYEEMRKD 70

Query: 372 LMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWFGSXR 551
           L+ KD+  Y  NG+LH+L RN  IKP PE+FQ C + FDVI TC    Y++V+E      
Sbjct: 71  LVRKDRQRYNSNGILHILGRNERIKPRPERFQECRDHFDVIFTCAESVYNKVVEELWVRE 130

Query: 552 SIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
               QPVHV+N+D+  N E+AT+G+F+I ++
Sbjct: 131 QETFQPVHVINVDMADNLEDATLGSFIICEL 161


>UniRef50_O42868 Cluster: RNA polymerase II subunit A C-terminal
           domain phosphatase ssu72; n=7; Fungi/Metazoa group|Rep:
           RNA polymerase II subunit A C-terminal domain
           phosphatase ssu72 - Schizosaccharomyces pombe (Fission
           yeast)
          Length = 197

 Score =  168 bits (408), Expect = 1e-40
 Identities = 76/156 (48%), Positives = 106/156 (67%)
 Frame = +3

Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
           ++L ++V+C+SN NRSMEAH  L   G+ V S+GTG  V+LPG S D+PN Y+FG  YDE
Sbjct: 5   TNLQISVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDE 64

Query: 360 IYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWF 539
           IY +L  +D   YT NGLL MLDRNR IK  P ++Q  +  ++++ITCE R YD + E  
Sbjct: 65  IYKELEAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQDSIYNIVITCEERCYDAICEDL 124

Query: 540 GSXRSIYNQPVHVVNIDIQXNHEEATIGAFLISDMV 647
                  N+PV+++N+DI+ NHEEA++G   I D+V
Sbjct: 125 YRRGETLNRPVYLINVDIKDNHEEASVGGKAILDLV 160


>UniRef50_P53538 Cluster: RNA polymerase II subunit A C-terminal
           domain phosphatase SSU72; n=7; Saccharomycetales|Rep:
           RNA polymerase II subunit A C-terminal domain
           phosphatase SSU72 - Saccharomyces cerevisiae (Baker's
           yeast)
          Length = 206

 Score =  160 bits (388), Expect = 3e-38
 Identities = 75/155 (48%), Positives = 101/155 (65%)
 Frame = +3

Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
           S+L    VC+SN NRSME+H  L + G+NV SYGTG  V+LPG S D+PN Y FG  Y++
Sbjct: 7   SNLKFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYSFGTPYND 66

Query: 360 IYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWF 539
           IYNDL+ +  + Y  NGLL MLDRNR +K  PEK+Q   + FD + TCE R +D V E  
Sbjct: 67  IYNDLLSQSADRYKSNGLLQMLDRNRRLKKAPEKWQESTKVFDFVFTCEERCFDAVCEDL 126

Query: 540 GSXRSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
            +     N+ VHV+N+DI+ + E A IG+  I ++
Sbjct: 127 MNRGGKLNKIVHVINVDIKDDDENAKIGSKAILEL 161


>UniRef50_Q2QX64 Cluster: Ssu72-like protein, expressed; n=3; Oryza
           sativa|Rep: Ssu72-like protein, expressed - Oryza sativa
           subsp. japonica (Rice)
          Length = 200

 Score =  142 bits (345), Expect = 5e-33
 Identities = 70/152 (46%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
 Frame = +3

Query: 195 AVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDL 374
           A+VCSSNMNRSMEAH+ L + G +V SYGTG  VKLPG S   PN Y+FG  Y+ IY+DL
Sbjct: 12  AMVCSSNMNRSMEAHSLLGRAGLDVASYGTGTHVKLPGPSLHEPNVYDFGTPYNVIYDDL 71

Query: 375 MEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQ--VCNERFDVIITCEXRXYDQVIEWFGSX 548
             KD + Y +NGLL ML RN  +K  P+++Q    +  FDVI + E R +D +++   + 
Sbjct: 72  RRKDPDLYKRNGLLPMLKRNTSVKLAPQRWQDNAGDGLFDVIFSFEERVFDLIVDDMHNR 131

Query: 549 RSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
                +   ++N+D++ NHEEA +GA L  D+
Sbjct: 132 EQRMLKNALIINMDVKDNHEEAGVGAKLALDL 163


>UniRef50_Q8SRQ6 Cluster: SSU72 PROTEIN HOMOLOG; n=1;
           Encephalitozoon cuniculi|Rep: SSU72 PROTEIN HOMOLOG -
           Encephalitozoon cuniculi
          Length = 193

 Score =  140 bits (338), Expect = 4e-32
 Identities = 65/152 (42%), Positives = 96/152 (63%)
 Frame = +3

Query: 192 VAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYND 371
           +AV C+ N NRSM+ H  L KKG  VKS+GT   +KLPG + D+PN Y FGV Y +IY+D
Sbjct: 6   LAVTCAMNQNRSMQTHDLLAKKGIPVKSFGTNPVIKLPGETMDKPNVYNFGVTYQQIYDD 65

Query: 372 LMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWFGSXR 551
           L  K++++Y ++G+L++L+RN  +K  PE F   +E FD++ITCE R +  + E++    
Sbjct: 66  LCMKNEDHYRESGILYLLERNMGVKERPENFFQRSEDFDLVITCEERVFTSIFEYYADAP 125

Query: 552 SIYNQPVHVVNIDIQXNHEEATIGAFLISDMV 647
           S   Q   +VN DI+    +A  GA  I + V
Sbjct: 126 SC-TQCFFMVNFDIRDTPSDAIAGAQEILEFV 156


>UniRef50_Q558Z3 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 214

 Score =  138 bits (335), Expect = 8e-32
 Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
 Frame = +3

Query: 192 VAVVCSSNMNRSMEAHAFLVKKGF-NVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYN 368
           +A+VC+SN NRS+EAH   VK GF N++S+GT    KLPG S  +PN + FG  Y EIY 
Sbjct: 24  IAMVCASNQNRSLEAHHLFVKNGFKNIRSFGTSAHCKLPGPSIHQPNIFSFGTPYQEIYT 83

Query: 369 DLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNE-RFDVIITCEXRXYDQVIEWF-- 539
            L  +D+  Y +NGLL+ML+RN  +K  PEK+Q   + +F+++ T + R YD VIE    
Sbjct: 84  SLKNQDQELYIRNGLLNMLERNISVKLAPEKWQEEQQSKFEIVYTFDQRVYDAVIEDLLQ 143

Query: 540 GSXRSIYNQPVHVVNIDIQXNHEEATIGA 626
               S   QPVH++N+ ++  HEEA  GA
Sbjct: 144 RDVSSSLLQPVHIINLQVKDTHEEAVGGA 172


>UniRef50_Q6BYP7 Cluster: RNA polymerase II subunit A C-terminal
           domain phosphatase SSU72; n=4; Saccharomycetales|Rep:
           RNA polymerase II subunit A C-terminal domain
           phosphatase SSU72 - Debaryomyces hansenii (Yeast)
           (Torulaspora hansenii)
          Length = 223

 Score =  135 bits (327), Expect = 8e-31
 Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 10/156 (6%)
 Frame = +3

Query: 186 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 365
           L +  VC++N NRSME+H  L   G+NV+S+GTG  V+LPG   D+PN YEFG  YD+IY
Sbjct: 6   LKICTVCAANNNRSMESHKQLKDAGYNVRSFGTGSAVRLPGPLVDKPNVYEFGTPYDDIY 65

Query: 366 NDLMEKD-KNYYTQNGLLHMLDRNRXIKPCPEKF--QVCNERFDVIITCEXRXYDQVIEW 536
            DL  ++    Y  NGL+ M++RNR IK  PEK+       +FD++ITCE R +D V++ 
Sbjct: 66  RDLTSQEYHKMYESNGLIRMINRNRHIKRAPEKWHNNASAGKFDLVITCEERCFDLVLDD 125

Query: 537 F-------GSXRSIYNQPVHVVNIDIQXNHEEATIG 623
                       +   Q VH++NIDI+ ++E A IG
Sbjct: 126 LMVRLVNKDQADTEIKQAVHIINIDIKDDYENAVIG 161


>UniRef50_Q4WHY5 Cluster: RNA polymerase II subunit A C-terminal
           domain phosphatase ssu72; n=16; Pezizomycotina|Rep: RNA
           polymerase II subunit A C-terminal domain phosphatase
           ssu72 - Aspergillus fumigatus (Sartorya fumigata)
          Length = 287

 Score =  125 bits (301), Expect = 1e-27
 Identities = 74/177 (41%), Positives = 98/177 (55%), Gaps = 24/177 (13%)
 Frame = +3

Query: 186 LYVAVVCSSNMNRSMEAHAFL--VKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVL-YD 356
           L    VC+SN NRSMEAH  L      F V S+GTG  V+LPG S  +PN Y F    Y 
Sbjct: 53  LKFCTVCASNQNRSMEAHLRLSTAPSPFPVISFGTGSLVRLPGPSITQPNVYNFNTTSYS 112

Query: 357 EIYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQ---------------------VC 473
           ++Y++L+ KD+  Y  NGLL+MLDRNR +K  PE+FQ                       
Sbjct: 113 QMYDELLAKDERLYRNNGLLNMLDRNRNLKWGPERFQDWVPGMPRVDHVSKGDKGALGTE 172

Query: 474 NERFDVIITCEXRXYDQVIEWFGSXRSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
               DVIITCE R +D V++   +  +  N+PVHV N+DI+ NHEEA +G   I ++
Sbjct: 173 GGTVDVIITCEERCWDAVVDDLMNKGAALNRPVHVFNVDIRDNHEEALVGGKAILEL 229


>UniRef50_Q00U02 Cluster: Protein involved in transcription start
           site selection; n=2; Ostreococcus|Rep: Protein involved
           in transcription start site selection - Ostreococcus
           tauri
          Length = 205

 Score =  118 bits (283), Expect = 2e-25
 Identities = 65/155 (41%), Positives = 93/155 (60%), Gaps = 7/155 (4%)
 Frame = +3

Query: 165 SNFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEF- 341
           S+   S    A VC++N NRSMEAH  L++ GF+VKSYG   +VKLPGAS D PN Y+F 
Sbjct: 3   SSTSRSGYRYACVCAANFNRSMEAHRVLLENGFDVKSYGAASRVKLPGASRDDPNVYDFD 62

Query: 342 GVLYDEIYNDLMEKDKNY---YTQNGLLHMLDRNRXIKPCPEKFQVCNER---FDVIITC 503
           G  Y+EI  DL  + ++    Y + G+  ML RN  IK CPE+++   ER   FDVI+  
Sbjct: 63  GTSYEEILRDLRSQSEDLVKNYEERGMFDMLVRNAKIKRCPERWKTHRERGETFDVIVCF 122

Query: 504 EXRXYDQVIEWFGSXRSIYNQPVHVVNIDIQXNHE 608
           E R +D V+    +     +  + VVN+D++ ++E
Sbjct: 123 EERVFDLVVMDLRAAGGARDAAL-VVNLDVRDSYE 156


>UniRef50_UPI00004982BE Cluster: conserved hypothetical protein;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
           hypothetical protein - Entamoeba histolytica HM-1:IMSS
          Length = 201

 Score =  114 bits (275), Expect = 2e-24
 Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 2/154 (1%)
 Frame = +3

Query: 192 VAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYND 371
           +AV+C SN NRS+ AH  L + G+NV S+GTG    LPGA+  R   ++FG+ Y +I N 
Sbjct: 15  IAVICRSNQNRSISAHCRLKQLGYNVSSFGTGVYTILPGAT--RNFGFQFGIPYKDIKNS 72

Query: 372 LMEKDKN--YYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWFGS 545
           L + + +  YY +N +  MLDRN  +K  PEKFQ C + F++IIT +   +  V+E+F S
Sbjct: 73  LPKDEASVEYYRKNKIYQMLDRNANLKSAPEKFQDCKKEFNIIITLDYSVFMDVLEYFDS 132

Query: 546 XRSIYNQPVHVVNIDIQXNHEEATIGAFLISDMV 647
             S      +V N+ +    + A  GA  +S+ +
Sbjct: 133 RESSTGSLCYVFNLTVMDQLDTAEKGAIEVSEFL 166


>UniRef50_Q5SV18 Cluster: SSU72 RNA polymerase II CTD phosphatase
           homolog; n=9; Euteleostomi|Rep: SSU72 RNA polymerase II
           CTD phosphatase homolog - Homo sapiens (Human)
          Length = 111

 Score =  104 bits (250), Expect = 2e-21
 Identities = 47/75 (62%), Positives = 57/75 (76%)
 Frame = +3

Query: 420 MLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWFGSXRSIYNQPVHVVNIDIQX 599
           MLDRN+ IKP PE+FQ C + FD+I+TCE R YDQV+E   S      QPVHVVN+DIQ 
Sbjct: 1   MLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQD 60

Query: 600 NHEEATIGAFLISDM 644
           NHEEAT+GAFLI ++
Sbjct: 61  NHEEATLGAFLICEL 75


>UniRef50_Q9H933 Cluster: CDNA FLJ13048 fis, clone NT2RP3001399,
           weakly similar to SSU72 PROTEIN (Ssu72 RNA polymerase II
           CTD phosphatase homolog (Yeast), isoform CRA_a); n=1;
           Homo sapiens|Rep: CDNA FLJ13048 fis, clone NT2RP3001399,
           weakly similar to SSU72 PROTEIN (Ssu72 RNA polymerase II
           CTD phosphatase homolog (Yeast), isoform CRA_a) - Homo
           sapiens (Human)
          Length = 153

 Score =  104 bits (249), Expect = 2e-21
 Identities = 46/73 (63%), Positives = 56/73 (76%)
 Frame = +3

Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
           S L VAVVCSSN NRSMEAH  L K+GF+V+S+GTG  VKLPG + D+PN Y+F   YD+
Sbjct: 4   SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63

Query: 360 IYNDLMEKDKNYY 398
           +YNDL+ KDK  Y
Sbjct: 64  MYNDLLRKDKELY 76


>UniRef50_A2FVC5 Cluster: SSU72 protein-related protein; n=1;
           Trichomonas vaginalis G3|Rep: SSU72 protein-related
           protein - Trichomonas vaginalis G3
          Length = 204

 Score = 99.5 bits (237), Expect = 6e-20
 Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 5/152 (3%)
 Frame = +3

Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
           + L  A VC+SN+NRSME H  L + GFNV SYGT + VK+PGAS + P  ++FG  Y E
Sbjct: 5   NQLAFACVCASNVNRSMEGHRVLKEAGFNVSSYGTNDYVKMPGAS-NVPLQFDFGATYKE 63

Query: 360 IYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQ-----VCNERFDVIITCEXRXYDQ 524
           I + +  ++  YY + GL+ ML  +   K  PE++         + FDVI T +    D+
Sbjct: 64  ILSKMESENNQYYEEQGLIKMLRDDANTKEKPERWSSTFNPATLKYFDVIFTYDNNVMDR 123

Query: 525 VIEWFGSXRSIYNQPVHVVNIDIQXNHEEATI 620
           V+  F    +   Q  HVVNI    + + A +
Sbjct: 124 VLNEFRENGNRTFQISHVVNIQTPDSRDNAIL 155


>UniRef50_UPI0000F20D86 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 228

 Score = 98.7 bits (235), Expect = 1e-19
 Identities = 43/68 (63%), Positives = 54/68 (79%)
 Frame = +3

Query: 186 LYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIY 365
           L VAVVCSSN NRSMEAH  L K+GF+V+S+GTG  VKLPG + D+PN Y+F   Y+++Y
Sbjct: 6   LRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMY 65

Query: 366 NDLMEKDK 389
           NDL+ KDK
Sbjct: 66  NDLVRKDK 73


>UniRef50_A5GAI1 Cluster: Putative uncharacterized protein
           precursor; n=1; Geobacter uraniumreducens Rf4|Rep:
           Putative uncharacterized protein precursor - Geobacter
           uraniumreducens Rf4
          Length = 195

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 29/95 (30%), Positives = 40/95 (42%)
 Frame = +3

Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 359
           SD   AV  SS    S  +   L+     + SYG G  + L GA A  P    F  L+D 
Sbjct: 85  SDTNGAVSSSSGPIVSGISEEVLLSSANFIGSYGNGSHIDLSGAVASMPGNDFFDGLFDG 144

Query: 360 IYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKF 464
           +++D  + D      +G  H  D N  + P P  F
Sbjct: 145 LFDDFFDNDHGPGNNDGGGH--DNNAPV-PEPASF 176


>UniRef50_Q93GC2 Cluster: GlyA; n=1; Xanthomonas campestris|Rep:
           GlyA - Xanthomonas campestris
          Length = 374

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = +3

Query: 252 KKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDR 431
           + GF VK Y TGE  ++PGA    P    FG    E   +L    K+      L H    
Sbjct: 157 RPGFVVKDYDTGECWRVPGACPGYPENSTFGC--GESVAELQATRKSQIDPRRLFHNQQE 214

Query: 432 NRXIKPCPEKFQVCN-ERFDVIITCEXRXY 518
               K C  + Q+ N +  D++I    R Y
Sbjct: 215 CIARKSCELRCQMDNCQWMDLVIPAFTRPY 244


>UniRef50_Q6W1J7 Cluster: Transcriptional regulatory protein; n=1;
           Rhizobium sp. NGR234|Rep: Transcriptional regulatory
           protein - Rhizobium sp. (strain NGR234)
          Length = 366

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 22/65 (33%), Positives = 35/65 (53%)
 Frame = +3

Query: 168 NFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGV 347
           N K+S+ +VA +CS N+    +  A  +K+G    +Y  G+K  L  AS DR   Y  G+
Sbjct: 175 NNKLSNEWVASICSDNVEGGRQIAALFLKRGARRFAYIGGKKGNL--ASEDRFAGYLSGL 232

Query: 348 LYDEI 362
           + + I
Sbjct: 233 MQNGI 237


>UniRef50_A7AZY7 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus gnavus ATCC 29149|Rep: Putative
           uncharacterized protein - Ruminococcus gnavus ATCC 29149
          Length = 305

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +3

Query: 333 YEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXR 512
           YEF V   + Y D+++  KN+ ++ G+L++ + NR  K   + F  CN  F  ++ C   
Sbjct: 118 YEFAVHETKTY-DVIQDVKNFKSEIGILYVNEFNR--KVLTKLFHECNLEFHELLKCSIY 174

Query: 513 XY 518
            Y
Sbjct: 175 VY 176


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 536,292,400
Number of Sequences: 1657284
Number of extensions: 9250846
Number of successful extensions: 19487
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 18937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19466
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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