Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F12
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0437 - 3449611-3449715,3451831-3451878,3452002-3452120,345...   142   2e-34
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480...    33   0.15 
10_08_0572 + 18860770-18860911,18861928-18862115,18862224-188624...    28   7.4  

>12_01_0437 -
           3449611-3449715,3451831-3451878,3452002-3452120,
           3452277-3452422,3452760-3452986
          Length = 214

 Score =  142 bits (344), Expect = 2e-34
 Identities = 70/152 (46%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
 Frame = +3

Query: 195 AVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDL 374
           A+VCSSNMNRSMEAH+ L + G +V SYGTG  VKLPG S   PN Y+FG  Y+ IY+DL
Sbjct: 10  AMVCSSNMNRSMEAHSLLGRAGLDVASYGTGTHVKLPGPSLHEPNVYDFGTPYNVIYDDL 69

Query: 375 MEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQ--VCNERFDVIITCEXRXYDQVIEWFGSX 548
             KD + Y +NGLL ML RN  +K  P+++Q    +  FDVI + E R +D +++   + 
Sbjct: 70  RRKDPDLYKRNGLLPMLKRNTSVKLAPQRWQDNAGDGLFDVIFSFEERVFDLIVDDMHNR 129

Query: 549 RSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
                +   ++N+D++ NHEEA +GA L  D+
Sbjct: 130 EQRMLKNALIINMDVKDNHEEAGVGAKLALDL 161


>06_03_0783 -
           24546403-24546765,24547202-24547262,24547899-24548004,
           24548118-24551600,24553134-24553179
          Length = 1352

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +3

Query: 336 EFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRX--IKPCPEKFQVCNERFDVIITCEX 509
           ++G     + +DLM  D  ++T NG  + LD +    I P      +  ER D++ TC+ 
Sbjct: 540 QYGGTVHYVMHDLMN-DLAFHTSNGECYRLDVDEPEEIPPAVRHLSILAERIDLLCTCKL 598

Query: 510 RXYDQVIEW 536
           +    +I W
Sbjct: 599 QRLRTLIIW 607


>10_08_0572 +
           18860770-18860911,18861928-18862115,18862224-18862463,
           18862554-18862775,18865772-18865982,18866113-18866210
          Length = 366

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 168 NFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLP 305
           NFK+S   V+V+      RS+ + A  +  G  +K+ G G K  LP
Sbjct: 200 NFKLSSGGVSVLEYEESLRSVASRALKLILGVGMKTVGNGRKNPLP 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,580,064
Number of Sequences: 37544
Number of extensions: 228832
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)