Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F12
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40030-1|AAR12977.1|  235|Caenorhabditis elegans Hypothetical pr...   192   2e-49
AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical...    30   1.2  
AC006708-8|AAF60429.3|  481|Caenorhabditis elegans Hypothetical ...    29   2.8  

>U40030-1|AAR12977.1|  235|Caenorhabditis elegans Hypothetical
           protein T13C2.4 protein.
          Length = 235

 Score =  192 bits (468), Expect = 2e-49
 Identities = 86/156 (55%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
 Frame = +3

Query: 180 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFG-VLYD 356
           S L  AV CSSNMNRSMEAH  L K+GFN++SYG+G +VK+PG + D+PNCYEFG   Y+
Sbjct: 43  SKLRFAVSCSSNMNRSMEAHGILKKRGFNIESYGSGNQVKMPGPTVDKPNCYEFGPTTYE 102

Query: 357 EIYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEW 536
           +IY DL  KD + YTQNGLLHM+DRNR IK  P++FQ     FD+++  E R +DQV+++
Sbjct: 103 DIYADLTNKDLHLYTQNGLLHMVDRNRRIKSRPQRFQAETREFDIVLCLEERVFDQVVDF 162

Query: 537 FGSXRSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
                     PVHV+NIDI+ N EEAT GAF ++D+
Sbjct: 163 LNRSVGKSGNPVHVINIDIEDNAEEATFGAFFVADL 198


>AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.12a protein.
          Length = 1187

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +3

Query: 216 MNRSMEAHAFLVKKGFNVKSYGT-GEKVKLPGASADRPNCYEFGVLYDEI-YNDLMEKDK 389
           M  ++  +A L +KG  +    T G K  L   +  RP  ++F +   E+ Y D++E D+
Sbjct: 76  MGTTVATNALLERKGERIGLLITKGFKDLLFIGNQARPKIFDFNIQIPEVLYEDVVEVDE 135

Query: 390 NYYTQNGLLHMLDRNRXIKPCPEKFQVCNER 482
                     +LD N  I+      Q+  E+
Sbjct: 136 RVLILEQTKELLDENAQIETTINGLQIVVEK 166


>AC006708-8|AAF60429.3|  481|Caenorhabditis elegans Hypothetical
           protein Y110A7A.15a protein.
          Length = 481

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/55 (36%), Positives = 23/55 (41%)
 Frame = +3

Query: 303 PGASADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQ 467
           P    + P  Y  GV YDEI ND +  D+N    N LL M      I  C    Q
Sbjct: 162 PDLLKNEPLGYPLGVAYDEIRNDWLICDRN---MNKLLIMNVEKEEIHVCKGAIQ 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,874,411
Number of Sequences: 27780
Number of extensions: 239103
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)