Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F12
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 147 KCSVX*SNFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEK 293
           KC+   S++        +   S ++   E + FL KKGF++  Y    K
Sbjct: 168 KCATDFSSWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHMDGYTNNSK 216


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = +3

Query: 396 YTQNGLLHMLDRNRXIKPCPEKFQVCNERFDVIITCEXRXYDQVIEWFGSXRSIYNQPV 572
           + QNG  +       +KPCP   ++ N+   V+ +     Y  ++        IYN  V
Sbjct: 217 FAQNGPFNTTTIFVPVKPCPWICELTNDAGYVVYSALGSFYIPMLVMLFFYWRIYNAAV 275


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/44 (20%), Positives = 24/44 (54%)
 Frame = +3

Query: 165 SNFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKV 296
           S+ ++++ + A++   N+N + +      KKG +++ Y    K+
Sbjct: 522 SDIELANTFKAIIYGFNVNATKQIKDEANKKGVSLRFYNVVYKL 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,454
Number of Sequences: 438
Number of extensions: 2946
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)