Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F12
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73820.1 68414.m08547 Ssu72-like family protein contains Pfam...   140   1e-33
At1g04370.1 68414.m00427 ethylene-responsive factor, putative Si...    28   4.7  
At2g37310.1 68415.m04576 pentatricopeptide (PPR) repeat-containi...    27   8.1  
At2g13600.1 68415.m01499 pentatricopeptide (PPR) repeat-containi...    27   8.1  

>At1g73820.1 68414.m08547 Ssu72-like family protein contains Pfam
           profile PF04722: Ssu72-like protein; similar to SSU72
           protein (Swiss-Prot:P53538) [Saccharomyces cerevisiae]
          Length = 193

 Score =  140 bits (338), Expect = 1e-33
 Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
 Frame = +3

Query: 195 AVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDEIYNDL 374
           A+VCSSN NRSMEAHA L ++G +V SYGTG  VKLPG S   PN Y+FG  Y +++++L
Sbjct: 6   AMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQMFDEL 65

Query: 375 MEKDKNYYTQNGLLHMLDRNRXIKPCPEKFQ--VCNERFDVIITCEXRXYDQVIEWFGSX 548
             KD   Y +NG+L M+ RN  +K  P+++Q    +  FDV++T E + +D V+E   + 
Sbjct: 66  RRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLEDLNNR 125

Query: 549 RSIYNQPVHVVNIDIQXNHEEATIGAFLISDM 644
                + + V+N++++ NHEEA IG  L  ++
Sbjct: 126 EQSLTKTILVMNLEVKDNHEEAAIGGRLALEL 157


>At1g04370.1 68414.m00427 ethylene-responsive factor, putative
           Similar to Nicotiana EREBP-3 (gb|D38124)
          Length = 133

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 279 GTGEKVKLPGASADRPNCYEFGVLYDEIYNDLMEKDKNY 395
           GTG       +S+     +EF  L D + ++L+E  +NY
Sbjct: 83  GTGSSSTAANSSSSSQQVFEFEYLDDSVLDELLEYGENY 121


>At2g37310.1 68415.m04576 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 657

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 147 KCSVX*SNFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGT 284
           +C    +   +S L  ++  SSN+    E HAF ++ G +   Y T
Sbjct: 359 RCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVT 404


>At2g13600.1 68415.m01499 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 697

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +3

Query: 153 SVX*SNFKMSDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASAD---R 323
           SV  +++  +++  A    + ++  M+AH  ++K GF  +S G  + + +  +  D   +
Sbjct: 381 SVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQS-GEEDDIFVGNSLIDMYVK 439

Query: 324 PNCYEFGVLYDEIYNDLMEKD 386
             C E G L   ++  +ME+D
Sbjct: 440 CGCVEEGYL---VFRKMMERD 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,758,420
Number of Sequences: 28952
Number of extensions: 210933
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)