BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_F10 (652 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb... 51 1e-07 SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 31 0.19 SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 28 1.0 SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 28 1.0 SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 28 1.0 SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 27 1.8 SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 26 4.1 SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 4.1 SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 4.1 SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 26 5.4 SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 25 7.2 SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 9.5 SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 25 9.5 >SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 109 Score = 51.2 bits (117), Expect = 1e-07 Identities = 19/41 (46%), Positives = 31/41 (75%) Frame = +1 Query: 223 NALPTRQYLDQTVVPILLQGLSALAKERPPDPINYLAAYLL 345 N+ P RQYL++ V P+LL+G+ LA++RP +P+ +L +LL Sbjct: 3 NSAPARQYLNEKVTPVLLEGMKILARDRPENPLQFLGQFLL 43 >SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 185 Score = 30.7 bits (66), Expect = 0.19 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -2 Query: 642 IDYIFSFCQL*CTYAYYKANWYIFXSLLNNRXI 544 ID FS C CT Y+ N Y+ +LN R + Sbjct: 81 IDAFFSMCLRSCTIIYFSMNPYMLCEILNARNV 113 >SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein Mug36|Schizosaccharomyces pombe|chr 2|||Manual Length = 1646 Score = 28.3 bits (60), Expect = 1.0 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = +1 Query: 199 NRKSRIDLNALPTRQYLDQTVVPILLQGLS 288 NR+ R++ + LP + Y+DQ + L++ L+ Sbjct: 1333 NRELRLEFSVLPCKMYIDQDTLDFLIRFLT 1362 >SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizosaccharomyces pombe|chr 2|||Manual Length = 230 Score = 28.3 bits (60), Expect = 1.0 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%) Frame = -2 Query: 483 KMFPVIALRLATFIVCIIIK----LYLCLWVCWLIIVIA 379 K P+I++ +A +V I + LY+C W+ + I+++A Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILILA 185 >SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizosaccharomyces pombe|chr 2|||Manual Length = 230 Score = 28.3 bits (60), Expect = 1.0 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%) Frame = -2 Query: 483 KMFPVIALRLATFIVCIIIK----LYLCLWVCWLIIVIA 379 K P+I++ +A +V I + LY+C W+ + I+++A Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILILA 185 >SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 334 Score = 27.5 bits (58), Expect = 1.8 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = +1 Query: 109 NHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRI 216 + N+ ++ TTK +S+KKI L E + + A ++S + Sbjct: 88 SENELDEETTKNANSIKKISLEEVEKQRKAIKRSGV 123 >SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 339 Score = 26.2 bits (55), Expect = 4.1 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +3 Query: 48 NILQSSTKIITTHVRKFNTDKSQQGRTIHDEN 143 NIL I+ ++R+ NT+ G TI+D N Sbjct: 243 NILSRCFSILNKNIRQKNTENDAAGFTINDLN 274 >SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 1473 Score = 26.2 bits (55), Expect = 4.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 Query: 133 TTKIPDSVKKIILMEKDNEANANRK 207 T KI + VK I+++++DN NRK Sbjct: 1165 TDKIMEVVKAILIVQRDNGDRENRK 1189 >SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual Length = 935 Score = 26.2 bits (55), Expect = 4.1 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = -1 Query: 493 SVQQNVSSHCFEISYFHCLHYNKAILMFVGLLVDYCYCL 377 SV ++ S +EI+ HC H+++ +L + L Y + L Sbjct: 409 SVIADIESGEYEIAIEHCFHFSQTVLSGLRYLQRYDWLL 447 >SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosaccharomyces pombe|chr 1|||Manual Length = 189 Score = 25.8 bits (54), Expect = 5.4 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -2 Query: 483 KMFPVIALRLATFIVCIIIKLYLCLWVC-WLI 391 K P+I++ +A +V I + + L++C WL+ Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLL 178 >SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Schizosaccharomyces pombe|chr 2|||Manual Length = 134 Score = 25.4 bits (53), Expect = 7.2 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = +1 Query: 52 FFKVQLK*LQPMSESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSR 213 F V LK Q SS I H EE + I VKK +E + + N + + Sbjct: 9 FMNVNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYDQIESEYKTNIENEKK 62 >SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||Manual Length = 468 Score = 25.0 bits (52), Expect = 9.5 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 124 EQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPT 237 + T KI D K + + ++ N RKS ++LNAL T Sbjct: 121 DSGTLKIVDEKK---YLREISQCNRTRKSFVELNALQT 155 >SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate transferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 453 Score = 25.0 bits (52), Expect = 9.5 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +1 Query: 142 IPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVVPILLQGLSAL 294 +PD+ K IL D ++ +S IDL+AL + L + + P+ + S L Sbjct: 151 LPDTEKSSILQRLDGFVDSLMQSGIDLDALAAK--LTKPIRPLWVTPASRL 199 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,483,701 Number of Sequences: 5004 Number of extensions: 47305 Number of successful extensions: 139 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 137 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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