Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F10
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28681| Best HMM Match : Dpy-30 (HMM E-Value=2.2e-19) 99 3e-21
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11) 40 0.001
SB_13568| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05) 31 0.62
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_52503| Best HMM Match : zf-CCHC (HMM E-Value=2.6) 29 2.5
SB_54463| Best HMM Match : TolA (HMM E-Value=0.39) 28 5.7
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 5.7
SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13) 28 7.6
SB_6251| Best HMM Match : NMU (HMM E-Value=5.7) 28 7.6
>SB_28681| Best HMM Match : Dpy-30 (HMM E-Value=2.2e-19)
Length = 371
Score = 99.1 bits (236), Expect = 3e-21
Identities = 48/80 (60%), Positives = 65/80 (81%)
Frame = +1
Query: 127 QSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVVPILLQGLSALAKER 306
Q+ + ++++KII EK+ EA+ K+++DL +LPTR YLDQTVVPILLQGL+ LAKER
Sbjct: 290 QAEIGLTENLQKIIEKEKE-EADKPTKAKVDLQSLPTRAYLDQTVVPILLQGLATLAKER 348
Query: 307 PPDPINYLAAYLLKNKTTFE 366
PP+ I+YLAAYLLKNK+ +E
Sbjct: 349 PPNAIDYLAAYLLKNKSQYE 368
>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
Length = 806
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 187 EANANRKSRIDLNALPTRQYLDQTVVPILLQGLSALAKERPPDPINYLAAYL 342
E + ++ ++P R YL + V+P L QGL K RP DPI+++ + L
Sbjct: 638 EVKKQEQELLENQSIPLRNYLMKHVMPTLTQGLIEACKVRPDDPIDFVVSML 689
>SB_13568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +1
Query: 76 LQPMSESSTQI--NHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTR 240
L+P+ E+ST +H +E+ +PDS +K L+E +NE+ ++ ++ D P++
Sbjct: 268 LEPVGEASTSRAGDHEMDEEEARCLPDSQRKTALVESENESWSDGGNKEDTPFDPSK 324
>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
Length = 249
Score = 31.5 bits (68), Expect = 0.62
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = +1
Query: 133 TTKIP-DSVKKIILMEKDNEANANRKSRIDLNALPTRQY-LDQTVVPILLQGLSALAKER 306
T KIP D + K L DNE A+ + + N LPT +++ + + +GL+
Sbjct: 89 TRKIPLDVLAKDWLY--DNELTADARVYLVENLLPTLILGVEKLLDEVTKRGLTDSEGFC 146
Query: 307 PP-DPINYLAAYLLKNKTTF 363
P +PINYLA YL++N +
Sbjct: 147 PDFNPINYLAQYLMRNNLKY 166
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 145 PDSVK--KIILMEKDNEANANRKSRIDLNALPTRQYLDQTVVPILLQGLSALAKERPPDP 318
PD VK +L EK+ R D + P R+ + TV+P QG + + +P DP
Sbjct: 274 PDKVKAKSFLLNEKERSLKEQFMQRQDKKSAPVRRVVMPTVIP--TQG-TQQSGPKPDDP 330
Query: 319 INYLAA 336
++ AA
Sbjct: 331 VSTAAA 336
>SB_52503| Best HMM Match : zf-CCHC (HMM E-Value=2.6)
Length = 517
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +1
Query: 13 YESRIAPQ*NSIIFFKVQLK*LQPMSESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEA 192
Y SR P +S+ F K + Q +S SST +N +K+E T DS + +L DN +
Sbjct: 358 YTSRW-PLYHSLHFLKDYINSKQSLSSSSTPLNTSKQELDCT--ADSDDQAVL-ASDNVS 413
Query: 193 NANRKS 210
N +++S
Sbjct: 414 NVSQES 419
>SB_54463| Best HMM Match : TolA (HMM E-Value=0.39)
Length = 461
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/99 (25%), Positives = 43/99 (43%)
Frame = +1
Query: 82 PMSESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTV 261
P + ++ + +Q K + KK + + R+SR D+N PT++ +
Sbjct: 70 PPTSANDGDTSKENQQLLHKCAQAQKKKAKRKNQRPKTSKRRSRKDINECPTKEDGPE-- 127
Query: 262 VPILLQGLSALAKERPPDPINYLAAYLLKNKTTFELANS 378
LS + +ER D I + A + +KT ELA S
Sbjct: 128 -------LSVIKRER-ADEIGHQAEEITPHKTASELAAS 158
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 91 ESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVV 264
+ S +N N ++ T P++ K+N+ N+ R+ LN +PT Q L Q ++
Sbjct: 1870 QHSVNVNINTAKKQTVATPET--------KNNDKNSKRQKISILNRIPTMQVLPQKIL 1919
>SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)
Length = 310
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 537 QILXFYYLTDXKIYTSLPYNMHMYTIV 617
Q+L ++Y D +YT+LPY ++ I+
Sbjct: 257 QVLLWHYYADKGLYTALPYAYNVRRII 283
>SB_6251| Best HMM Match : NMU (HMM E-Value=5.7)
Length = 186
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 537 QILXFYYLTDXKIYTSLPYNMHMYTIV 617
Q+L ++Y D +YT+LPY ++ I+
Sbjct: 64 QVLLWHYYADKGLYTALPYAYNVRRII 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,664,524
Number of Sequences: 59808
Number of extensions: 321316
Number of successful extensions: 779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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