Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F09
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.43 
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.2  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 365  LSSTXEKTRSSAXXKLLCQ--KIYSKXCSRFSXXAQKFTEY 481
            LSS  EK RSS+  K+ CQ   ++   C +F   A+   +Y
Sbjct: 3825 LSSLKEKLRSSSVDKMSCQLLMLFLPVCEQFINLAESVLDY 3865


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 357 CHICHQQXKRRVHLXTXNYFVKRFTPXCVADSLXMHKSSLNI 482
           CH+CH++   R+ + T     K     C+      HK   N+
Sbjct: 60  CHVCHRKNNMRLKVGTCESCKKHTCAICIRQ---CHKCESNV 98


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 335 MVHMNWAMSYLSSTXEKTRSSAXXKLLCQKIYSK 436
           M  +N  ++ LSS+  KTRS A   L    IYS+
Sbjct: 1   MTSLNDIVNKLSSSKIKTRSDALQNLRSYIIYSR 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,509
Number of Sequences: 5004
Number of extensions: 35172
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)