Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F08
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    96   4e-21
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   2.3  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   3.1  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    25   7.1  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   7.1  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   9.4  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 95.9 bits (228), Expect = 4e-21
 Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
 Frame = +1

Query: 136 PALKYIIANATTDQLKMLRGKTIECVSLIGLXVGEEKFMSDASEVMDLLLKTHTEGEQLP 315
           P L  ++  A   + + LRGKT+EC +LI L VG+++F+  + E++ +L   + +     
Sbjct: 540 PLLFNVLQQADGKEFRTLRGKTMECATLIALAVGKQRFLPVSQELIQIL--GNIQMGITD 597

Query: 316 ADDPQTSYLISAWSXICXIMGKKFSQYLPMVMEPVMRTAAMKPEVALLDNEHLXTIEGDL 495
           +DDPQ SYLISAW  IC ++G  F  +L  VM P++  A  KP+  ++D+E   +   + 
Sbjct: 598 SDDPQASYLISAWGRICRVLGSDFVPFLSSVMPPLLVAATSKPDFTIIDDEVDESKYSEQ 657

Query: 496 D-WHFVTLGEQQNFGIKTA 549
           D W F+ +  QQ  GI+T+
Sbjct: 658 DGWEFIPVHGQQ-VGIRTS 675



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +2

Query: 554 LEDKASACDMLVCYAPELKEAFAEYAEDVV 643
           LEDK +A +MLVCYA ELK  F  Y  +V+
Sbjct: 677 LEDKCTATEMLVCYAAELKADFDPYVNEVL 706



 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 84  LADTVEKDFVKYYDRLMP 137
           +AD   K F KY+D +MP
Sbjct: 523 VADAAAKKFEKYFDAIMP 540


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 518 ANNKTSALKLLGLEDKASACDMLVCYAPELK--EAFAEYA 631
           + + ++ LK LGL+ KA  C ++VC    L   + F +Y+
Sbjct: 466 SQSASARLKNLGLQQKAILCTLVVCEKTSLSVADVFEKYS 505


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 238  EEKFMSDASEVMDLLLKTHTEGEQLPADDPQTSYLISA 351
            E ++  DA +++DL+ K     + L  D+P+T +L  A
Sbjct: 975  EIEYGKDALDLVDLIPKEFPTSKDLGIDEPKTVFLTGA 1012


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 93  TVEKDFVKYYDRLMPCSEVYNC-QCY 167
           TV  D +  Y++L  CS   NC  CY
Sbjct: 390 TVLNDVIDAYEKLPDCSHTPNCVDCY 415


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +1

Query: 178 LKMLRGKTIECVSLIGLXVGEEKFMSDASEVMDLLLKTHTEGEQLPADDPQTSYLI 345
           L++L  K +    +IG  VGE K  ++ S+    + KT++   ++ A  P++SY +
Sbjct: 406 LEVLTSKGLTICGMIGNGVGENKKGTNISDTQIGISKTNS--WKMAAISPKSSYAL 459


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 491 SPSMVXKCSLSRSATSGFIAAVRITGSITI 402
           SP+     SL+ S+  GF+A  R+ G + I
Sbjct: 198 SPTTYEVSSLAYSSDGGFLAIARVNGFVEI 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,375
Number of Sequences: 5004
Number of extensions: 45336
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)