BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_F08 (649 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 96 4e-21 SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 27 2.3 SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 27 3.1 SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 25 7.1 SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 25 7.1 SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 25 9.4 >SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1095 Score = 95.9 bits (228), Expect = 4e-21 Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 1/139 (0%) Frame = +1 Query: 136 PALKYIIANATTDQLKMLRGKTIECVSLIGLXVGEEKFMSDASEVMDLLLKTHTEGEQLP 315 P L ++ A + + LRGKT+EC +LI L VG+++F+ + E++ +L + + Sbjct: 540 PLLFNVLQQADGKEFRTLRGKTMECATLIALAVGKQRFLPVSQELIQIL--GNIQMGITD 597 Query: 316 ADDPQTSYLISAWSXICXIMGKKFSQYLPMVMEPVMRTAAMKPEVALLDNEHLXTIEGDL 495 +DDPQ SYLISAW IC ++G F +L VM P++ A KP+ ++D+E + + Sbjct: 598 SDDPQASYLISAWGRICRVLGSDFVPFLSSVMPPLLVAATSKPDFTIIDDEVDESKYSEQ 657 Query: 496 D-WHFVTLGEQQNFGIKTA 549 D W F+ + QQ GI+T+ Sbjct: 658 DGWEFIPVHGQQ-VGIRTS 675 Score = 38.7 bits (86), Expect = 7e-04 Identities = 17/30 (56%), Positives = 21/30 (70%) Frame = +2 Query: 554 LEDKASACDMLVCYAPELKEAFAEYAEDVV 643 LEDK +A +MLVCYA ELK F Y +V+ Sbjct: 677 LEDKCTATEMLVCYAAELKADFDPYVNEVL 706 Score = 25.0 bits (52), Expect = 9.4 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +3 Query: 84 LADTVEKDFVKYYDRLMP 137 +AD K F KY+D +MP Sbjct: 523 VADAAAKKFEKYFDAIMP 540 >SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|||Manual Length = 577 Score = 27.1 bits (57), Expect = 2.3 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = +2 Query: 518 ANNKTSALKLLGLEDKASACDMLVCYAPELK--EAFAEYA 631 + + ++ LK LGL+ KA C ++VC L + F +Y+ Sbjct: 466 SQSASARLKNLGLQQKAILCTLVVCEKTSLSVADVFEKYS 505 >SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1419 Score = 26.6 bits (56), Expect = 3.1 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 238 EEKFMSDASEVMDLLLKTHTEGEQLPADDPQTSYLISA 351 E ++ DA +++DL+ K + L D+P+T +L A Sbjct: 975 EIEYGKDALDLVDLIPKEFPTSKDLGIDEPKTVFLTGA 1012 >SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosaccharomyces pombe|chr 1|||Manual Length = 424 Score = 25.4 bits (53), Expect = 7.1 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%) Frame = +3 Query: 93 TVEKDFVKYYDRLMPCSEVYNC-QCY 167 TV D + Y++L CS NC CY Sbjct: 390 TVLNDVIDAYEKLPDCSHTPNCVDCY 415 >SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Schizosaccharomyces pombe|chr 2|||Manual Length = 765 Score = 25.4 bits (53), Expect = 7.1 Identities = 16/56 (28%), Positives = 31/56 (55%) Frame = +1 Query: 178 LKMLRGKTIECVSLIGLXVGEEKFMSDASEVMDLLLKTHTEGEQLPADDPQTSYLI 345 L++L K + +IG VGE K ++ S+ + KT++ ++ A P++SY + Sbjct: 406 LEVLTSKGLTICGMIGNGVGENKKGTNISDTQIGISKTNS--WKMAAISPKSSYAL 459 >SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 509 Score = 25.0 bits (52), Expect = 9.4 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -3 Query: 491 SPSMVXKCSLSRSATSGFIAAVRITGSITI 402 SP+ SL+ S+ GF+A R+ G + I Sbjct: 198 SPTTYEVSSLAYSSDGGFLAIARVNGFVEI 227 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,418,375 Number of Sequences: 5004 Number of extensions: 45336 Number of successful extensions: 117 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 116 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 291768710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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