Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F08
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 116 2e-26
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 112 3e-25
03_02_0668 - 10290541-10290644,10290777-10290911,10291812-102919... 29 3.2
02_05_0925 - 32768815-32769654 29 3.2
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 28 7.4
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 28 7.4
04_03_0749 + 19280265-19280511,19280584-19280651,19280737-19281834 28 7.4
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011... 27 9.7
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458 27 9.7
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 116 bits (278), Expect = 2e-26
Identities = 56/139 (40%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
Frame = +1
Query: 136 PALKYIIANATTDQLKMLRGKTIECVSLIGLXVGEEKFMSDASEVMDLLLKTHTEGEQLP 315
P LK I+ NAT +MLR K++EC+SL+G+ VG++KF DA +VM++L+ +G +
Sbjct: 555 PYLKAILMNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSL--QGTTME 612
Query: 316 ADDPQTSYLISAWSXICXIMGKKFSQYLPMVMEPVMRTAAMKPEVALLDNEHLXTIEGDL 495
DDP TSY++ AW+ +C +G+ F Y+ +VM P++++A +KP+V + E IE D
Sbjct: 613 NDDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVTITSAESDDDIESDD 672
Query: 496 D-WHFVTLGEQQNFGIKTA 549
D +TLG+++ GI+T+
Sbjct: 673 DSIETITLGDKR-IGIRTS 690
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 524 NKTSALKLLGLEDKASACDMLVCYAPELKEAFAEYAEDV 640
+K ++ LE+KA+AC+ML CYA ELKE F + + V
Sbjct: 682 DKRIGIRTSVLEEKATACNMLCCYADELKEGFFPWIDQV 720
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 112 bits (269), Expect = 3e-25
Identities = 55/140 (39%), Positives = 92/140 (65%), Gaps = 2/140 (1%)
Frame = +1
Query: 136 PALKYIIANATTDQLKMLRGKTIECVSLIGLXVGEEKFMSDASEVMDLLLKTHTEGEQLP 315
P LK I+ NAT +MLR K++EC+SL+G+ VG++KF DA +VM++L+ +G Q+
Sbjct: 485 PYLKSILMNATDKSNRMLRAKSMECISLVGMAVGKQKFKDDAKQVMEVLMTL--QGSQME 542
Query: 316 ADDPQTSYLISAWSXICXIMGKKFSQYLPMVMEPVMRTAAMKPEVALLD--NEHLXTIEG 489
ADDP TSY++ AW+ +C +G+ F Y+ +VM P++++A +KP+V++ E
Sbjct: 543 ADDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVSVTSAGPEDENGESD 602
Query: 490 DLDWHFVTLGEQQNFGIKTA 549
D +TLG+++ GI+T+
Sbjct: 603 DEGVETITLGDKR-IGIRTS 621
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 554 LEDKASACDMLVCYAPELKEAFAEYAEDV 640
LE+KA+AC+ML CYA ELKE F + + V
Sbjct: 623 LEEKATACNMLCCYADELKEGFFPWIDQV 651
>03_02_0668 -
10290541-10290644,10290777-10290911,10291812-10291905,
10291994-10292089,10292458-10292639,10293578-10293658,
10293746-10293875,10293996-10294181,10294567-10294692
Length = 377
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -3
Query: 446 SGFIAAVRITGSITIGKYCENFLPIIXQIXDQAEIRYDV*GSSA 315
+G AA+ I S++ K+C+NF ++ ++ + ++ +D+ G A
Sbjct: 49 AGAFAAMGIDNSVSADKFCKNFKVVVNRLTED-DMEFDMIGIDA 91
>02_05_0925 - 32768815-32769654
Length = 279
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 545 VLMPKFCCSPSVTKCQSRSPSMVXKCSLSR 456
V M SPS++ C S SP M+ +C L +
Sbjct: 240 VPMSLLSSSPSLSSCSSTSPEMLGRCELGQ 269
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 84 LADTVEKDFVKYYDRLM--PCSEVYNCQCY 167
L DT++K VKY R+ PCS + C+
Sbjct: 432 LVDTLDKALVKYKKRIQHAPCSNTFRVWCH 461
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 238 EEKFMSDASEVMDLLLKTH--TEGEQLPADDPQTS 336
+E +DA++ M+++ +T + E PA+DPQTS
Sbjct: 21 QELVAADAAQPMEVVAQTEAASTAESQPAEDPQTS 55
>04_03_0749 + 19280265-19280511,19280584-19280651,19280737-19281834
Length = 470
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 202 IECVSLIGLXVGEEKFMSDASEVMDLLLKTHTEGEQLPADDPQTSYL 342
++ ++ +GL + + F SD S MD+ T +G ++ DD SY+
Sbjct: 58 VQVIADLGLVIRKAYFSSDGSWFMDVFNVTDRDGNKV-LDDQTISYI 103
>07_03_1091 +
23899825-23900649,23900750-23900998,23901104-23901195,
23901413-23902193
Length = 648
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = -3
Query: 596 HSKLTCHKQKLCLQVPAVLMPKFCCSPSVTKCQSRSPSMVXKCS---LSRSATSGFIAAV 426
H++ T KL L + P FCCS C RS S + SA A+
Sbjct: 477 HTRPT-ESPKLSLAESKPMTPLFCCSKPKCNCSKRSSRKASDGSSQGSNMSAAMDLAVAL 535
Query: 425 RITGSITIGKYCENFL 378
R + KY + FL
Sbjct: 536 RSECNCWFLKYIDKFL 551
>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
Length = 1217
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +1
Query: 67 DNNRLSLQTLLRKTLSNIMTDSCPALKYIIANATTDQLKMLRGKTIECVSLIGLXVGEEK 246
D N+ L L+ + + + D + +Y+ + D M+ T CV L VG +K
Sbjct: 65 DGNQRKLLRKLKDAIYSAV-DVLDSFQYMALKSKVDSQAMVSRVTSSCVYLGKRVVGTDK 123
Query: 247 FMSDASEVMDLLLKTHTEGEQL 312
F ++++ L + T + L
Sbjct: 124 FRRKLTDMLKKLDEVKTTADTL 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,055,791
Number of Sequences: 37544
Number of extensions: 274253
Number of successful extensions: 669
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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