Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F08
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23) 136 2e-32
SB_56077| Best HMM Match : Exo_endo_phos (HMM E-Value=0.55) 31 0.81
SB_32555| Best HMM Match : RVT_1 (HMM E-Value=2e-35) 29 3.3
SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35) 29 3.3
SB_45242| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 29 4.3
SB_15891| Best HMM Match : NGP1NT (HMM E-Value=1.2) 29 4.3
SB_58186| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 29 4.3
SB_3959| Best HMM Match : RVT_1 (HMM E-Value=6.4e-40) 29 4.3
SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36) 29 4.3
SB_25640| Best HMM Match : Sec23_BS (HMM E-Value=5.1) 28 7.5
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39) 28 7.5
SB_14363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
Length = 940
Score = 136 bits (328), Expect = 2e-32
Identities = 59/108 (54%), Positives = 82/108 (75%)
Frame = +1
Query: 136 PALKYIIANATTDQLKMLRGKTIECVSLIGLXVGEEKFMSDASEVMDLLLKTHTEGEQLP 315
P+LKYI+ N+ + ++LRGKTIEC+S IGL VG++KF+ DASE+M LLLKT T+ + L
Sbjct: 594 PSLKYIVQNSNSTDYRLLRGKTIECISFIGLAVGKDKFLPDASEIMQLLLKTQTDIDSLE 653
Query: 316 ADDPQTSYLISAWSXICXIMGKKFSQYLPMVMEPVMRTAAMKPEVALL 459
ADDPQ SY+ISAW+ +C IMG +F+QY+P+VM P+M+ + LL
Sbjct: 654 ADDPQVSYMISAWARMCKIMGTEFTQYMPLVMPPLMKVLVSNLKSPLL 701
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/60 (45%), Positives = 38/60 (63%)
Frame = +2
Query: 470 IXKPLKETLIGILSH*ANNKTSALKLLGLEDKASACDMLVCYAPELKEAFAEYAEDVVKL 649
+ PL + L+ L + + +GLE+K++AC MLV YA ELKE FA YAE+VV+L
Sbjct: 684 VMPPLMKVLVSNLKSPLLTQKFGINTVGLEEKSTACQMLVLYAKELKEGFAPYAEEVVQL 743
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/20 (60%), Positives = 19/20 (95%)
Frame = +2
Query: 23 QLVECGTKLVLEQIVTTIAS 82
+L++ GTKLV+EQ+VTT+A+
Sbjct: 557 ELLQRGTKLVMEQVVTTLAT 576
>SB_56077| Best HMM Match : Exo_endo_phos (HMM E-Value=0.55)
Length = 368
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 593 SKLTCHKQKLCLQVPAVLMPKFCCSPSVTKCQSRSPSMVXKCSLSRSATSGFIAAVRI-T 417
S ++ + CLQ+ A L+ +V CQ + S+ L+RS++ + V T
Sbjct: 48 SDFATYQSEFCLQIIARLLRTESVPLAVVSCQHKVCSLFSNLDLNRSSSLTTTSPVLFST 107
Query: 416 GSITIGKYC 390
GS I +YC
Sbjct: 108 GSHHITEYC 116
>SB_32555| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
Length = 895
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 34 MWYKTGTRTDCDNNR-LSLQTLLRKTLSNIM 123
++ GTRT C+N+R +SL T+ K L+ IM
Sbjct: 473 LYMNKGTRTVCENHRGISLLTIAGKILARIM 503
>SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
Length = 963
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 34 MWYKTGTRTDCDNNR-LSLQTLLRKTLSNIM 123
++ GTRT C+N+R +SL T+ K L+ IM
Sbjct: 487 LYMNKGTRTVCENHRGISLLTIAGKILARIM 517
>SB_45242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +1
Query: 40 YKT-GTRTDCDNNR-LSLQTLLRKTLSNIM 123
YK GTRT C+N+R +SL T+ K L+ IM
Sbjct: 14 YKNKGTRTVCENHRGISLLTIAGKILARIM 43
>SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 629
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +1
Query: 40 YKT-GTRTDCDNNR-LSLQTLLRKTLSNIM 123
YK GTRT C+N+R +SL T+ K L+ IM
Sbjct: 160 YKNKGTRTVCENHRGISLLTIAGKILARIM 189
>SB_15891| Best HMM Match : NGP1NT (HMM E-Value=1.2)
Length = 422
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +1
Query: 40 YKT-GTRTDCDNNR-LSLQTLLRKTLSNIM 123
YK GTRT C+N+R +SL T+ K L+ IM
Sbjct: 370 YKNKGTRTVCENHRGISLLTIAGKILARIM 399
>SB_58186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 43 KTGTRTDCDNNR-LSLQTLLRKTLSNIM 123
+ GTRT C+N+R +SL T+ K L+ IM
Sbjct: 405 REGTRTVCENHRGISLLTIAGKILARIM 432
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +1
Query: 40 YKT-GTRTDCDNNR-LSLQTLLRKTLSNIM 123
YK GTRT C+N+R +SL T+ K L+ IM
Sbjct: 2902 YKNKGTRTVCENHRGISLLTIAGKILARIM 2931
>SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 869
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +1
Query: 40 YKT-GTRTDCDNNR-LSLQTLLRKTLSNIM 123
YK GTRT C+N+R +SL T+ K L+ IM
Sbjct: 420 YKNKGTRTVCENHRGISLLTIAGKILARIM 449
>SB_3959| Best HMM Match : RVT_1 (HMM E-Value=6.4e-40)
Length = 380
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +1
Query: 40 YKT-GTRTDCDNNR-LSLQTLLRKTLSNIM 123
YK GTRT C+N+R +SL T+ K L+ IM
Sbjct: 64 YKNKGTRTVCENHRGISLLTIAGKILARIM 93
>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
Length = 1195
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +1
Query: 40 YKT-GTRTDCDNNR-LSLQTLLRKTLSNIM 123
YK GTRT C+N+R +SL T+ K L+ IM
Sbjct: 656 YKNKGTRTVCENHRGISLLTIAGKILARIM 685
>SB_25640| Best HMM Match : Sec23_BS (HMM E-Value=5.1)
Length = 291
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 283 LKTHTE-GEQLPADDPQTSYLISAWSXICXIMGKKFSQYLPMVMEPVMRTAAM 438
LK H E GE A+D S + + ++ + + Y+ E V+RTA M
Sbjct: 213 LKLHEEAGESTDAEDSGNSSDVMMTGHVVGVLQRNWRDYVVSFAEDVVRTAKM 265
>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
Length = 432
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 608 LVLEHSKLTCHKQKLCLQVPAVLMPKFCCSPSVT-KCQSRSPSMVXKCSLSRSATS 444
++L+ T KLCLQ P V+ + + S T CQS++ S C L +T+
Sbjct: 287 IILDKVGTTRRTVKLCLQ-PLVVSCSYLKALSTTVSCQSKALSTTVSCQLKALSTT 341
>SB_14363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Frame = -2
Query: 510 DKMPIKVSFNGX*MFIIKKCYFWLH----CCCTHYRLHN 406
DK + +S+ + CY LH CC TH R HN
Sbjct: 64 DKSLVAISYIREAQITRRNCYIGLHASSLCCQTHVRNHN 102
>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 241 EKFMSDASEVMDLLLKTHTEGEQLPADDPQTSYLISAWSXI 363
++ ++D V+ L+ H + LP+ DP S ++ W +
Sbjct: 744 KRMLTDPDMVLQLV--AHIKARHLPSGDPDVSIMVDMWKAL 782
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,173,012
Number of Sequences: 59808
Number of extensions: 347149
Number of successful extensions: 846
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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