Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F08
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...   114   6e-26
AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical ...    32   0.40 
AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical ...    32   0.40 

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score =  114 bits (274), Expect = 6e-26
 Identities = 59/140 (42%), Positives = 93/140 (66%), Gaps = 1/140 (0%)
 Frame = +1

Query: 136 PALKYIIANATTDQLKMLRGKTIECVSLIGLXVGEEKFMSDASEVMDLLLKTHTEG-EQL 312
           P L +I+ N    +LK LRGKTIEC+SLIG  VG+E+F + A E+++LL     +G + L
Sbjct: 533 PNLVHILQNV--GELKELRGKTIECISLIGYAVGKEQFHATAIEILNLL----GDGMKDL 586

Query: 313 PADDPQTSYLISAWSXICXIMGKKFSQYLPMVMEPVMRTAAMKPEVALLDNEHLXTIEGD 492
             DDPQ SY+IS+W+  C I+G  F+ +LP+VM+PV+R A  +P+  + +NE +   E  
Sbjct: 587 AIDDPQYSYMISSWTRFCSILGADFAPFLPVVMDPVLRAARYRPDFNIFNNEDVHENEEG 646

Query: 493 LDWHFVTLGEQQNFGIKTAG 552
           +++H   +G ++  GI+T+G
Sbjct: 647 VEYH--GIGGEKTVGIRTSG 664



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +2

Query: 527 KTSALKLLGLEDKASACDMLVCYAPELKEAFAEYAEDVVKL 649
           KT  ++  GLE+KA+ACDMLV +A E+KEAF  Y  DV +L
Sbjct: 656 KTVGIRTSGLEEKATACDMLVAFAKEMKEAFMPYVVDVYEL 696


>AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical
           protein Y73F8A.9 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 581 CHKQKLCLQVPAVLMPKFCCSPSVTKCQSRSPSMVXKCS 465
           C +Q L  QVP     + C  P  T CQ  +P  V +C+
Sbjct: 210 CQQQCLLQQVPVQQCYQECTQPCQTTCQQAAPQCVQQCA 248


>AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical
           protein Y73F8A.8 protein.
          Length = 420

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 581 CHKQKLCLQVPAVLMPKFCCSPSVTKCQSRSPSMVXKCS 465
           C +Q L  QVP     + C  P  T CQ  +P  V +C+
Sbjct: 211 CQQQCLLQQVPVQQCYQECTQPCQTTCQQAAPQCVQQCA 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,609,464
Number of Sequences: 27780
Number of extensions: 264914
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)