Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F08
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...   116   2e-26
At5g06120.1 68418.m00680 Ran-binding protein, putative similar t...    32   0.38 
At1g06900.1 68414.m00733 peptidase M16 family protein / insulina...    29   2.7  
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR...    29   3.5  
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ...    29   3.5  
At1g62750.1 68414.m07082 elongation factor Tu family protein sim...    29   3.5  
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    28   6.1  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score =  116 bits (278), Expect = 2e-26
 Identities = 55/140 (39%), Positives = 92/140 (65%), Gaps = 2/140 (1%)
 Frame = +1

Query: 136 PALKYIIANATTDQLKMLRGKTIECVSLIGLXVGEEKFMSDASEVMDLLLKTHTEGEQLP 315
           P LK I+ NAT    +MLR K++EC+SL+G+ VG+++F  DA +VM++L+    +G Q+ 
Sbjct: 548 PYLKTILMNATDKSKRMLRAKSMECISLVGMAVGKDRFKEDARQVMEVLMSL--QGSQME 605

Query: 316 ADDPQTSYLISAWSXICXIMGKKFSQYLPMVMEPVMRTAAMKPEVAL--LDNEHLXTIEG 489
           ADDP TSY++ AW+ +C  +G+ F  Y+ +VM P++++A +KP+V +   D+E       
Sbjct: 606 ADDPITSYMLQAWARLCKCLGQDFLPYMKVVMPPLLQSAQLKPDVTITSADSEDEAEDSD 665

Query: 490 DLDWHFVTLGEQQNFGIKTA 549
           D     + LG+++  GIKT+
Sbjct: 666 DESMETIILGDKR-IGIKTS 684



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = +2

Query: 524 NKTSALKLLGLEDKASACDMLVCYAPELKEAFAEYAEDV 640
           +K   +K   LE+KA+AC+ML CYA ELKE F  + + V
Sbjct: 676 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQV 714


>At5g06120.1 68418.m00680 Ran-binding protein, putative similar to
           SP|Q9UIA9 Ran-binding protein 16 {Homo sapiens};
           contains Pfam profile PF03810: Importin-beta N-terminal
           domain
          Length = 1066

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = +1

Query: 343 ISAWSXICXIMGKKFSQYLPMVMEPVMRTAAMKPEVALLDNEHLXTIEGDLDW 501
           +  +  +C    ++   Y+   MEP++++   + ++   DN  L  IE  L W
Sbjct: 438 LDCFPYLCRFQYERTGMYIINTMEPLLQSYTERGQLQFADNSELALIEAKLSW 490


>At1g06900.1 68414.m00733 peptidase M16 family protein / insulinase
           family protein contains Pfam domain, PF05193: Peptidase
           M16 inactive domain; similar to insulin-degrading enzyme
           (Insulysin, Insulinase, Insulin protease) [Mouse]
           SWISS-PROT:Q9JHR7
          Length = 1023

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 379 KKFSQYLPMVMEPVMRTAAMKPEVALLDNEHLXTIEGD 492
           K+FSQ+    + P+M+T AM+ EV  +D+E    ++ D
Sbjct: 184 KRFSQFF---VAPLMKTEAMEREVLAVDSEFNQALQND 218


>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1167

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 101 LNSVCKLRRLLSQSVRVPVLYHIQPTVKR*KKK 3
           LN + K++ L  + V +P+ Y+++P   R +K+
Sbjct: 85  LNELVKMKELEGKLVTIPIFYNVEPATVRYQKE 117


>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 419

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -3

Query: 590 KLTCHKQKLCLQVPAVLMPKFCCSPSVTKCQSRSPSMVXKCSLSRSATSGFIAAVR 423
           ++TCH  K   Q PA L+P     P  T C   S S+     +S + T G  A+ R
Sbjct: 366 QITCHNCKQHFQAPAALVP----PPPQTHCTDESTSLAVS-YMSSATTEGEKASDR 416


>At1g62750.1 68414.m07082 elongation factor Tu family protein
           similar to elongation factor G SP:P34811 [Glycine max
           (Soybean)]
          Length = 783

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 400 PMVMEPVMRTAAMKPEVALLDNEHLXTIEGDLDWHFVTLGEQQNFGIKTAG 552
           P ++EP+MR   + PE      EHL  + GDL+      G+  +FG K  G
Sbjct: 685 PRMLEPIMRVEVVTPE------EHLGDVIGDLN---SRRGQINSFGDKPGG 726


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/82 (24%), Positives = 37/82 (45%)
 Frame = +1

Query: 166 TTDQLKMLRGKTIECVSLIGLXVGEEKFMSDASEVMDLLLKTHTEGEQLPADDPQTSYLI 345
           T D+    R ++ E V ++ + VG +   +     +D  +     G +L   + +  Y  
Sbjct: 513 TKDEDLRARARSTELVGIVAMSVGRKGMEAILPPFIDAAIS----GFELEFSELR-EYTH 567

Query: 346 SAWSXICXIMGKKFSQYLPMVM 411
             +S +  I+   F+QYLP VM
Sbjct: 568 GFFSNVAEILDDTFAQYLPRVM 589


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,554,531
Number of Sequences: 28952
Number of extensions: 233722
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)