Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F06
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    29   0.57 
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    27   2.3  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   3.0  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    26   4.0  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    25   9.3  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   9.3  

>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 461 GLVQVCSHSKTTAYSASSNKETSN 532
           GLVQ  S + T AYSA+SN + S+
Sbjct: 656 GLVQQVSENNTNAYSATSNSQLSS 679


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 345 ACKRERYYQIANSLATPGTDVHLTTTRALILDNNLIINPDWS 470
           A K+ER+ +I+     P  +  L TT+  +L N   +  +WS
Sbjct: 95  ATKKERHIKISADTFLPLKNKPLITTKFTVLKNRNAVQLEWS 136


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 29  LLVASFAAFKPQASEAQSLIGNLAPRFTCL 118
           LL AS    K Q  E  SLI N+  RFT L
Sbjct: 892 LLQASEKRLKEQVEERNSLIKNIVTRFTQL 921


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +3

Query: 96  LLQGSHVFGNLIPPNI------CNEDQSQKFKGALAEFSSRLYRVAGQSSNFHFVV 245
           LL GSH+ GN++   +       NE    +++GAL  F+  L+    + S+   ++
Sbjct: 183 LLLGSHILGNIMWDVLSLHRYPVNESGDSQYQGALVGFAFNLFSFKNKFSSLRSIL 238


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 168 FKGALAEFSSRLYRVAGQSSNFH 236
           F G ++ FSS  Y ++GQ S FH
Sbjct: 55  FCGVMSIFSSLRYCLSGQQSAFH 77


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +2

Query: 428 LDFG*QSNNKPGLVQVCSHSKTTAYSASSNKETS----NRPRK-SD*XXRNN 568
           +DF     N P  +   SH +T++ S S +  TS    NR  K SD   +NN
Sbjct: 152 IDFESSQQNNPSSLNTSSHHRTSSISNSKSFGTSLSYYNRSSKPSDWNQQNN 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,699
Number of Sequences: 5004
Number of extensions: 53938
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)