Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F06
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1152 + 9170628-9171899                                           33   0.25 
04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469...    30   1.8  
11_05_0070 + 18818127-18818404,18818492-18818532,18818691-188189...    27   9.6  
08_01_1046 - 10608463-10608506,10608892-10609039                       27   9.6  
07_03_0538 + 19231318-19231382,19231652-19232390,19232468-192325...    27   9.6  
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639...    27   9.6  

>01_01_1152 + 9170628-9171899
          Length = 423

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 180 LAEFSSRLYRVAGQSSNFHFVVAPLSIWLSLAALGXGGDPKSQKELFEVLNLPAEA 347
           LA    R    AG     +F+V+PLS   +LA +  G   ++Q+EL   L  P+ A
Sbjct: 42  LAREVGRRAAAAGGGQGRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLA 97


>04_04_1323 +
           32644956-32645096,32645488-32646126,32646701-32646907,
           32647020-32647100,32647686-32648566,32648641-32648932,
           32649657-32650673,32651334-32651605,32651992-32652493
          Length = 1343

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 216 GQSSNFHFVVAPLSIWLSLAALGXGGDPKSQKELFEVLNL-PAEAC 350
           G+  +  F+ A + IWL   ALG   D    K++F+V+N+   +AC
Sbjct: 406 GKIISISFLYANMPIWLMFFALGISSD----KDIFDVINMEDCDAC 447


>11_05_0070 +
           18818127-18818404,18818492-18818532,18818691-18818990,
           18820005-18820757,18820840-18820889
          Length = 473

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 435 LDNNLIINPDWSKFVHTAKLLHIVRAPIKKHLTDHENPIXXREITQDEESFG 590
           LDN+L   P   + VH+      +RA  +  +    +    RE T DE  FG
Sbjct: 130 LDNSLDDEPPEPRVVHSVNAFPFMRASGQNPIKAFSDISILRETTADESFFG 181


>08_01_1046 - 10608463-10608506,10608892-10609039
          Length = 63

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 142 SAMKIRVRSSREPSQSFHRVCTGSPVRAATSILSWP 249
           SAM+ R RS  + S S H++ +G+ + AAT + S P
Sbjct: 28  SAMEERWRSLAKSSNSGHQIRSGTGLLAATRMRSTP 63


>07_03_0538 +
           19231318-19231382,19231652-19232390,19232468-19232516,
           19232600-19232664,19232774-19232828,19234107-19234225,
           19234346-19234412,19235316-19235437,19235521-19235790
          Length = 516

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 300 KSQKELFEVLNLPAEACKRERYYQIANSLATPGTD 404
           K++K LF+   +  +ACK+ R   I++     GTD
Sbjct: 42  KTKKYLFKPNTMTTQACKKRRAVYISSESEDSGTD 76


>03_02_0205 +
           6389343-6389609,6390418-6390486,6390662-6390757,
           6391120-6391244,6391331-6391483,6392863-6392992,
           6393122-6393282,6393660-6393702,6393869-6394042,
           6394471-6394525,6394567-6394746,6396234-6396339,
           6396448-6396506,6397419-6397541,6397825-6397919
          Length = 611

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = +2

Query: 179 PRRVFIAFVQGRRSEQQLPFCRGPIIYLAVISSTR-------XRRRPEVAKGTIRSSQFT 337
           P  ++  FVQGRR   ++ F +  I Y  + S+TR        RR P+     IR  Q +
Sbjct: 339 PLAIYQEFVQGRRWGYEICFNQRTICYSIMDSATRISSSCSVARRIPDDHSALIRDKQNS 398

Query: 338 CRSM*TRKVLPN 373
              + ++   PN
Sbjct: 399 YNQVDSKAANPN 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,699,451
Number of Sequences: 37544
Number of extensions: 356843
Number of successful extensions: 927
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)