Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F06
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          26   0.36 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      26   0.36 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.47 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.82 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   0.82 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.4  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 423 VSWSNGRQFPAWPDYSQFGNTFRVYMLRQVN*ELRIVPFATSGLLL 286
           +++SNG  FP  P +S F      Y+   +N E RI     SG +L
Sbjct: 299 MTYSNGLPFPQRPIWSNFPIYKYKYIREIMNKESRISAAIDSGYIL 344


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 423 VSWSNGRQFPAWPDYSQFGNTFRVYMLRQVN*ELRIVPFATSGLLL 286
           +++SNG  FP  P +S F      Y+   +N E RI     SG +L
Sbjct: 299 MTYSNGLPFPQRPIWSNFPIYKYKYIREIMNKESRISAAIDSGYIL 344


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 616 SKVSIRNEFPKDSSSCVISLXSIGFSWSVRCFFIG 512
           SKVS R E  +D ++ ++SL    ++W      IG
Sbjct: 364 SKVSARIEMNEDDNTSLVSLDKKQYTWRHTSVLIG 398


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 461 GLVQVCSHSKTTAYSASSNKETSNRPRKSD*XXRNNAR*GIFREFVP 601
           G    CS+S++   S SS    SNR   S    R  +  G   E +P
Sbjct: 16  GYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALP 62


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 461 GLVQVCSHSKTTAYSASSNKETSNRPRKSD*XXRNNAR*GIFREFVP 601
           G    CS+S++   S SS    SNR   S    R  +  G   E +P
Sbjct: 16  GYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALP 62


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 446 SNNKPGLVQVCSHSKTTAYSASS 514
           S+  PG +Q C+ S  TA   SS
Sbjct: 20  SSANPGTIQACTTSPATASLESS 42


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/14 (57%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = +3

Query: 108 SH-VFGNLIPPNIC 146
           SH + GNL+PP +C
Sbjct: 358 SHPLHGNLLPPGVC 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,936
Number of Sequences: 438
Number of extensions: 3616
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)