Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F03
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 209 2e-55
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 209 2e-55
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 202 3e-53
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.33
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.0
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 5.3
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 25 9.3
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 209 bits (511), Expect = 2e-55
Identities = 96/160 (60%), Positives = 115/160 (71%)
Frame = +1
Query: 46 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKRCNV 225
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 226 NPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 405
NP+RG FHF APS I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 406 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKA 525
LKPGR YC VGRLS E+GWKY D+V KLE+ RK K+
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKS 165
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 209 bits (510), Expect = 2e-55
Identities = 96/160 (60%), Positives = 115/160 (71%)
Frame = +1
Query: 46 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKRCNV 225
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 226 NPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 405
NP+RG FHF APS I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 406 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKA 525
LKPGR YC VGRLS E+GWKY D+V KLE+ RK K+
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKS 165
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 202 bits (493), Expect = 3e-53
Identities = 90/160 (56%), Positives = 114/160 (71%)
Frame = +1
Query: 46 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKRCNV 225
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FF NKLK +++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 226 NPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 405
NP+RG FHF APS I K VRGM+PHKT RG AL+ L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 406 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKA 525
LKP R YC +GRLS E+GWKY+++V KLE+ RK K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 29.5 bits (63), Expect = 0.33
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 73 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNK 186
H L + AV K++ G K VV+RC+ I + +FF ++
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFFCSR 194
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 359 GHPSYVRSLLRAFLPRSVLCGIMP 288
G+ SY+ + L+AFLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 221 LHLLRRNDISLSLFVKKLPEMLICSQRTTTTLFPSRRTLAMTA 93
++L+R+ND + +KK+ + LI ++ T R L T+
Sbjct: 316 VYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 9.3
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 234 SRIHVAPLTQE*HKLEFVRKEVARDVDLFAANHNNFVPFEKDLGDDCR 91
SR +P+T E K E R ++ + F ++ NF+ F+ +L +D R
Sbjct: 22 SRGRTSPITLEHIKNELFRYKLRNEEPPFILHNKNFLIFQ-ELEEDVR 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,220
Number of Sequences: 5004
Number of extensions: 38877
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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