Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F03
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 192 1e-49
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 191 3e-49
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 106 1e-23
11_04_0056 + 12942802-12942920,12943022-12943115 58 3e-09
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 35 0.036
04_03_0232 - 13049649-13052807 30 1.0
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 4.1
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166 28 5.4
04_03_0148 + 11869929-11869968,11870000-11870421 27 7.1
04_03_0779 - 19507771-19507992,19508678-19508990,19509235-195092... 27 9.4
03_05_0149 - 21278418-21278747,21279170-21279238,21279709-212797... 27 9.4
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 192 bits (469), Expect = 1e-49
Identities = 85/163 (52%), Positives = 110/163 (67%)
Frame = +1
Query: 37 LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
L T+ +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG K+K + FLRKR
Sbjct: 7 LCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKR 66
Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 396
N P+ GP HF APS I W+TVRGMIPHKT RG+ AL L+ +DG PPP+D
Sbjct: 67 MNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVP 126
Query: 397 XXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKA 525
L+PG YC +G+LS E+GW Y D +R+LE+ RK KA
Sbjct: 127 DALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA 169
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 191 bits (465), Expect = 3e-49
Identities = 84/158 (53%), Positives = 110/158 (69%)
Frame = +1
Query: 52 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKRCNVNP 231
+V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG K+K + FLRKR N P
Sbjct: 12 VVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 71
Query: 232 ARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 411
+ GP HF +P+ ILW+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D
Sbjct: 72 SHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 131
Query: 412 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKA 525
L+PG YC +G+LS E+GW Y D +R+LE+ RK KA
Sbjct: 132 LRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA 169
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 106 bits (254), Expect = 1e-23
Identities = 44/92 (47%), Positives = 58/92 (63%)
Frame = +1
Query: 220 NVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 399
N P+ GP HF +P+ ILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 400 XXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVR 495
L+PG YC +G+LS E+GW Y D +R
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 3e-09
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +1
Query: 313 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 480
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 35.1 bits (77), Expect = 0.036
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 12/118 (10%)
Frame = +1
Query: 55 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFTNKLKLM 198
V+D +LGRLA+ IA + N+ VVVV E++ +SG + KL
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600
Query: 199 SFLRKRCNVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 372
R P I+ VRGM+P K G+ L+ Y G P +
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 523 PCPSXCLQAYEQHHGISIQFHGTVCLH 443
PCPS CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 91 AAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMS 201
A A ++ + VVVV CE+ I+G N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
Length = 940
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 451 RLSHEIGWKYRDVVRKLEDXRKGK 522
R+ HEIG K R + RKLE+ K K
Sbjct: 116 RVHHEIGNKIRSLNRKLEEIAKDK 139
>04_03_0148 + 11869929-11869968,11870000-11870421
Length = 153
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 59 SMAVVICWAVWRQSSPRSF 115
S+ ++ICW VW++ + R F
Sbjct: 99 SLVLLICWMVWKERNARVF 117
>04_03_0779 -
19507771-19507992,19508678-19508990,19509235-19509296,
19509845-19509904,19510260-19510367,19510452-19510561,
19510656-19510701,19510812-19510884,19510970-19511100,
19511270-19511356,19511871-19511968,19512849-19512971,
19513091-19513286
Length = 542
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 508 CLQAYEQHHGISIQFHGTVCLHDSNYGQVSDRRHV 404
C+Q ++ HG + G + HD +YG ++ R+V
Sbjct: 486 CVQHGKKEHGYEPKRDGNIDYHDLSYGTPAEVRNV 520
>03_05_0149 -
21278418-21278747,21279170-21279238,21279709-21279797,
21280395-21280467,21280846-21280917
Length = 210
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 272 RXLDGAXKWKGPRAGFTLHLLRRNDISLSL 183
R DG +WK RA + L+ NDI L +
Sbjct: 170 RGPDGGWEWKARRAAAAIILVPANDIDLDM 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,467,596
Number of Sequences: 37544
Number of extensions: 287730
Number of successful extensions: 690
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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