Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_F03
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             30   1.0  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)             28   5.4  
SB_57593| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +1

Query: 292 MIPHKTERGKNALRRLRTYDGCPPPFD 372
           MIPHKT++G  A+ R++ +DG PPP+D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
 Frame = +1

Query: 55  VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFTNKLKLM 198
           +IDGR  + GRLA  I ++L              G+ VVV+  + I +SG  + NKL   
Sbjct: 20  LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKLYRH 79

Query: 199 SFLRKRCNVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 369
                           H    + ILW+ V GM+P K       ++RL  ++    P+
Sbjct: 80  HTGYPGGLKEILAKDLHRKDGTRILWRAVNGMLP-KNNLRPTWMKRLYLFEDEHHPY 135


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 59  SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSTSLA 169
           SM+V +C ++W  + P  F    +L+W+  + S S++
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWYNTHPSVSVS 301


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +1

Query: 118  EGNKVVVVRCEQINISGNFFTNKLKLMSFLRKRCNVNPARG-PFHFXAPSXILWKTVRGM 294
            +G+    V+   IN+      N   ++  LR    V   R     +     + ++T+  +
Sbjct: 837  QGHSTCKVKGLHINLRTGDIVNLTSMLELLRVEGAVAEERHVTLPYTIQRNVHYRTLHTV 896

Query: 295  IPHKTER---GKNALRRLRTYDGCPPP 366
              HKT R    K   R +RTY   PPP
Sbjct: 897  PAHKTFRFVYNKRVRRGMRTYPYAPPP 923


>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
          Length = 453

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 166 GNFFTNKLKLMSFLRKRCNVNPARGP 243
           GN F+  L+L S  R+ C+ NP+  P
Sbjct: 318 GNVFSRPLRLFSRARRMCSWNPSDNP 343


>SB_57593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 88  DGPADDHGHRSLWP*LLKPVIFTTKREKQ 2
           DGP    GHRS+W  L +  +   +RE Q
Sbjct: 130 DGPGCSQGHRSVWHTLQQRGVRVPRREVQ 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,241
Number of Sequences: 59808
Number of extensions: 323989
Number of successful extensions: 1507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)