Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F03
(530 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 204 2e-53
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 204 2e-53
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 29 2.1
U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical p... 27 6.3
U46753-6|AAO21474.1| 740|Caenorhabditis elegans Hypothetical pr... 27 8.4
U46753-5|ABB88235.1| 803|Caenorhabditis elegans Hypothetical pr... 27 8.4
U46753-4|AAO21475.1| 764|Caenorhabditis elegans Hypothetical pr... 27 8.4
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 204 bits (499), Expect = 2e-53
Identities = 94/162 (58%), Positives = 119/162 (73%)
Frame = +1
Query: 37 LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
L+ +AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF +KLK MSFLRKR
Sbjct: 3 LSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKR 62
Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 396
CN+NPARG FH+ AP I W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 63 CNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHA 121
Query: 397 XXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGK 522
F L+P R +C VGRLSHE+GW+++DVV KLE RK K
Sbjct: 122 PSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVK 163
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 204 bits (499), Expect = 2e-53
Identities = 94/162 (58%), Positives = 119/162 (73%)
Frame = +1
Query: 37 LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
L+ +AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF +KLK MSFLRKR
Sbjct: 3 LSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKR 62
Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 396
CN+NPARG FH+ AP I W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 63 CNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHA 121
Query: 397 XXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGK 522
F L+P R +C VGRLSHE+GW+++DVV KLE RK K
Sbjct: 122 PSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVK 163
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 523 PCPSXCLQAYEQHHGISIQFHGTVCLHD 440
PCP E+ HGI++Q G CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 520 CPSXCLQAYEQHHGISIQFHGTVCLHDSNY 431
C S L +E HHGI + G + L D++Y
Sbjct: 329 CSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358
>U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical
protein C50E3.2 protein.
Length = 168
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 498 LTNNITVFPSNFMGQSAYMTVITARFQTE 412
L NNI VFPSN + +++ MT+ R +T+
Sbjct: 27 LENNILVFPSN-ISEASGMTLFHGRIETK 54
>U46753-6|AAO21474.1| 740|Caenorhabditis elegans Hypothetical
protein C34F11.3a protein.
Length = 740
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 234 SRIHVAPLTQE*HKLEFVRKEVARDVDLFAANHN 133
+ IH A + H L F++K++ + D N+N
Sbjct: 294 THIHAASSMNQKHLLRFIKKKIKTEADTVVLNNN 327
>U46753-5|ABB88235.1| 803|Caenorhabditis elegans Hypothetical
protein C34F11.3c protein.
Length = 803
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 234 SRIHVAPLTQE*HKLEFVRKEVARDVDLFAANHN 133
+ IH A + H L F++K++ + D N+N
Sbjct: 357 THIHAASSMNQKHLLRFIKKKIKTEADTVVLNNN 390
>U46753-4|AAO21475.1| 764|Caenorhabditis elegans Hypothetical
protein C34F11.3b protein.
Length = 764
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 234 SRIHVAPLTQE*HKLEFVRKEVARDVDLFAANHN 133
+ IH A + H L F++K++ + D N+N
Sbjct: 318 THIHAASSMNQKHLLRFIKKKIKTEADTVVLNNN 351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,870,501
Number of Sequences: 27780
Number of extensions: 232587
Number of successful extensions: 579
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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