Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_F03
(530 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 185 1e-47
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 184 4e-47
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 182 1e-46
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 182 2e-46
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si... 31 0.37
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 28 4.5
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 185 bits (451), Expect = 1e-47
Identities = 82/163 (50%), Positives = 108/163 (66%)
Frame = +1
Query: 37 LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
+ K +V+D R H+LGRLA+V+AK LL G +VVVRCE+I +SG K+K M FLRKR
Sbjct: 7 ICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKR 66
Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 396
N P+ GP HF APS I W+TVRGMIPHKT+RG NAL RL+ ++G P P+D
Sbjct: 67 MNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVP 126
Query: 397 XXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKA 525
L+ G YC +GRLS E+GW + D +++LE+ RK +A
Sbjct: 127 DALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERA 169
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 184 bits (447), Expect = 4e-47
Identities = 82/163 (50%), Positives = 107/163 (65%)
Frame = +1
Query: 37 LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
+ +K +V+D R H+LGRLA++ AK LL G KVV+VRCE+I +SG K+K M FLRKR
Sbjct: 7 ICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKR 66
Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 396
N P+ GP HF APS I W+TVRGMIPHKT+RG AL RL+ Y+G P P+D
Sbjct: 67 MNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIP 126
Query: 397 XXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKA 525
L+ G YC +GRLS E+GW + D +++LE RK +A
Sbjct: 127 DALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERA 169
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 182 bits (444), Expect = 1e-46
Identities = 82/163 (50%), Positives = 107/163 (65%)
Frame = +1
Query: 37 LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
+ K +V+DGR H+LGRLA+ AK LL G +VVVVRCE+I +SG K+K M FLRKR
Sbjct: 7 ICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKR 66
Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 396
N P+ GP HF APS I W+TVRGMIPHKT+RG AL RL+ ++G PPP+D
Sbjct: 67 MNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIP 126
Query: 397 XXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKA 525
L+ G YC +GRLS E+GW + D +++LE RK ++
Sbjct: 127 DALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERS 169
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 182 bits (442), Expect = 2e-46
Identities = 81/163 (49%), Positives = 107/163 (65%)
Frame = +1
Query: 37 LATKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFTNKLKLMSFLRKR 216
+ +K +V+D R H+ GRLA++IAK LL G VVVVRCE+I +SG K+K M FLRKR
Sbjct: 7 ICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKR 66
Query: 217 CNVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX 396
N P+ GP HF APS I W+TVRGMIPHKT+RG AL RL+ ++G PPP+D
Sbjct: 67 MNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIP 126
Query: 397 XXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDXRKGKA 525
L+ G YC +GRLS E+GW + D +++LE RK ++
Sbjct: 127 DALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERS 169
>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
similar to ribosomal protein L13 GI:170132 from
[Spinacia oleracea]
Length = 241
Score = 31.5 bits (68), Expect = 0.37
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 12/118 (10%)
Frame = +1
Query: 55 VIDGRGHLLGRLAAVIA-----KVLLE-------GNKVVVVRCEQINISGNFFTNKLKLM 198
V+D +LGRLA+ IA K L G V+VV E++ +SG KL
Sbjct: 107 VVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRR 166
Query: 199 SFLRKRCNVNPARGPFHFXAPSXILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 372
R P I+ VRGM+P K G+ L+ Y G P +
Sbjct: 167 HSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPHE 223
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = -1
Query: 296 IMPLTVFHRXLDGAXKWKGPRAGFTLHLLRRNDISLSLFVKKLPEM 159
++ L + H LD W+G + LH LR+ D+S S+ +K+LP++
Sbjct: 655 LIELNLTHSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,347,828
Number of Sequences: 28952
Number of extensions: 220650
Number of successful extensions: 534
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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