Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E21
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1422 + 33453498-33453519,33453617-33454887                       28   5.4  
01_07_0004 - 40354253-40354353,40354598-40354670,40356196-403563...    28   7.2  
05_04_0198 + 18973973-18974592,18974992-18975440,18976031-189761...    27   9.5  

>04_04_1422 + 33453498-33453519,33453617-33454887
          Length = 430

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 614 IGPVGRTVYTAALQVCLYDINSXXDVLVYRILSNGSVQ 501
           IG +GRT +   +++  +  ++    LVY  L NGS++
Sbjct: 140 IGTIGRTYHVHLVRLYGFCFDADTKALVYEFLENGSLE 177


>01_07_0004 -
           40354253-40354353,40354598-40354670,40356196-40356319,
           40357821-40358222,40358704-40358732
          Length = 242

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 133 PLARLELSLLLNVPSXFCFNSPCFAXYGIDHPDS 234
           PL  LE +LLL +PS FCF + C    G   P S
Sbjct: 158 PLEPLEFALLL-LPSPFCFANICNPKQGKVSPGS 190


>05_04_0198 +
           18973973-18974592,18974992-18975440,18976031-18976166,
           18976252-18976323,18976389-18976457,18976546-18976617,
           18978192-18978250,18978643-18978734
          Length = 522

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
 Frame = +2

Query: 26  VARLXPLLAAGCELILFPLANYNFGR*LFNFELTTGPSQG----WNCPCC*TYPHXFAST 193
           ++ L PL+ AG    LFPL  Y F R     E      Q     WN   C   PH +A T
Sbjct: 330 ISGLPPLINAGEVFGLFPLGGYTFPRDAHALEAIKRSLQNIPDDWNGDPC--MPHGYAWT 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,697,023
Number of Sequences: 37544
Number of extensions: 265128
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)