Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E21
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    73   3e-15
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.3  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 72.5 bits (170), Expect = 3e-15
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
 Frame = +3

Query: 360 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY--MKHTDLEDSVMRNLNASITQYPVX 533
           CCGA++E+HCM ITF+ FLL I + ++AV +  +  +K+ D   ++          Y + 
Sbjct: 70  CCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLN 129

Query: 534 KNVXXTIDIIQTDLQCCGINSPADWADHGLP 626
                 ID IQ +LQCCG++S +D+ D  +P
Sbjct: 130 SESKDFIDFIQKNLQCCGVHSLSDYNDKPIP 160


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 613 SAQSAGLFIPQHCKSVCMISIVXWT 539
           S+QSA + I +   ++C + ++ WT
Sbjct: 264 SSQSAEIRIAKAAITICFLYVLSWT 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,662
Number of Sequences: 438
Number of extensions: 2618
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)