BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_E17 (642 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 28 1.00 SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 26 4.0 SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ... 26 5.3 SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 25 7.0 SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.0 SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 25 9.3 >SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 1052 Score = 28.3 bits (60), Expect = 1.00 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +2 Query: 290 ENKLKLAALIERDTGVKINPASM-FDVQVKRIHEYKRQLLNI 412 EN+ K A LIE+D +I+ + F+ Q+K H K Q+ N+ Sbjct: 457 ENEKKAAKLIEKDLLSQISHVKLQFEQQIKAHHYAKDQVRNL 498 >SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr 2|||Manual Length = 307 Score = 26.2 bits (55), Expect = 4.0 Identities = 18/57 (31%), Positives = 33/57 (57%) Frame = -1 Query: 207 IQSSPILSQMRSDKPGLQRSNQRRGVMPLVLFWNLSGHISKKSRKIVAFKISE*MAA 37 I +P+++Q DK L++S+ V P NL+ + +K+RK++A ++ MAA Sbjct: 32 ILKNPLVAQGIVDKADLKQSDTVLEVGPGT--GNLTVRMLEKARKVIAVEMDPRMAA 86 >SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 252 Score = 25.8 bits (54), Expect = 5.3 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +3 Query: 105 NSKIRLTASLPGVGCSSATLAYLISSATRSE 197 NSK +L S+P G SS+ + S +T E Sbjct: 127 NSKYQLPGSMPNTGASSSQDPFTNSQSTEKE 157 >SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 877 Score = 25.4 bits (53), Expect = 7.0 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +3 Query: 45 FTPKS*KPLFSATFSKCGLINSKIRLTAS-LPGVGCSSATLAYL 173 F P +P +S T SK G I +R TAS L G SS +L+ L Sbjct: 36 FVPVYPEPTYSDTVSKKGTIVRVVRHTASKLTKHGDSSQSLSTL 79 >SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 4196 Score = 25.4 bits (53), Expect = 7.0 Identities = 10/38 (26%), Positives = 20/38 (52%) Frame = +2 Query: 284 KQENKLKLAALIERDTGVKINPASMFDVQVKRIHEYKR 397 K + + I++D ++I + F +Q + IH YK+ Sbjct: 1290 KATEQCLMVKYIKKDLEIEIEESCDFSIQTEEIHLYKK 1327 >SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 281 Score = 25.0 bits (52), Expect = 9.3 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +2 Query: 89 EMWPDKFQNKTNG--ITPRRWLLLCNPGLSDLICDKIGEDWIVHL 217 E + D+F K G RRW+ P L DL+ + GE I+ + Sbjct: 80 ERYWDQFYGKNEGKFFMNRRWIAQEFPELLDLLKEDAGEKSILEI 124 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,576,840 Number of Sequences: 5004 Number of extensions: 50808 Number of successful extensions: 123 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 123 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 287744314 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -