Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E17
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    28   1.00 
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    26   4.0  
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ...    26   5.3  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   7.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.0  
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    25   9.3  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 290 ENKLKLAALIERDTGVKINPASM-FDVQVKRIHEYKRQLLNI 412
           EN+ K A LIE+D   +I+   + F+ Q+K  H  K Q+ N+
Sbjct: 457 ENEKKAAKLIEKDLLSQISHVKLQFEQQIKAHHYAKDQVRNL 498


>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/57 (31%), Positives = 33/57 (57%)
 Frame = -1

Query: 207 IQSSPILSQMRSDKPGLQRSNQRRGVMPLVLFWNLSGHISKKSRKIVAFKISE*MAA 37
           I  +P+++Q   DK  L++S+    V P     NL+  + +K+RK++A ++   MAA
Sbjct: 32  ILKNPLVAQGIVDKADLKQSDTVLEVGPGT--GNLTVRMLEKARKVIAVEMDPRMAA 86


>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 105 NSKIRLTASLPGVGCSSATLAYLISSATRSE 197
           NSK +L  S+P  G SS+   +  S +T  E
Sbjct: 127 NSKYQLPGSMPNTGASSSQDPFTNSQSTEKE 157


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 45  FTPKS*KPLFSATFSKCGLINSKIRLTAS-LPGVGCSSATLAYL 173
           F P   +P +S T SK G I   +R TAS L   G SS +L+ L
Sbjct: 36  FVPVYPEPTYSDTVSKKGTIVRVVRHTASKLTKHGDSSQSLSTL 79


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 284  KQENKLKLAALIERDTGVKINPASMFDVQVKRIHEYKR 397
            K   +  +   I++D  ++I  +  F +Q + IH YK+
Sbjct: 1290 KATEQCLMVKYIKKDLEIEIEESCDFSIQTEEIHLYKK 1327


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 89  EMWPDKFQNKTNG--ITPRRWLLLCNPGLSDLICDKIGEDWIVHL 217
           E + D+F  K  G     RRW+    P L DL+ +  GE  I+ +
Sbjct: 80  ERYWDQFYGKNEGKFFMNRRWIAQEFPELLDLLKEDAGEKSILEI 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,840
Number of Sequences: 5004
Number of extensions: 50808
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)