Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E17
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53172| Best HMM Match : ABC_tran (HMM E-Value=5.4e-40)              35   0.065
SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_54274| Best HMM Match : Response_reg (HMM E-Value=0.49)             29   2.4  
SB_39896| Best HMM Match : DUF1018 (HMM E-Value=1.7)                   29   2.4  
SB_35182| Best HMM Match : CUB (HMM E-Value=0)                         29   2.4  
SB_8682| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_47770| Best HMM Match : DUF973 (HMM E-Value=0.3)                    29   4.2  
SB_37991| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)               28   7.4  
SB_28046| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_19076| Best HMM Match : HECT (HMM E-Value=0)                        27   9.8  

>SB_53172| Best HMM Match : ABC_tran (HMM E-Value=5.4e-40)
          Length = 665

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 393 LYSWMRFTWTSNIDAGLILTPVSLSIRAASLS-LFSCFTFITA 268
           L  W R TW +    G+I+  +SL+I A  L  LFS F F TA
Sbjct: 483 LAKWDRLTWANAYHRGIIVAYISLTIAANVLRYLFSFFIFFTA 525


>SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1116

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 393 LYSWMRFTWTSNIDAGLILTPVSLSIRAASLS-LFSCFTFITA 268
           L  W R TW +    G+I+  +SL+  A  L  LFS   ++TA
Sbjct: 615 LAKWDRLTWANADHRGIIVAYISLTFAANLLRYLFSFLVYVTA 657


>SB_54274| Best HMM Match : Response_reg (HMM E-Value=0.49)
          Length = 310

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 32  GVAAIHSEILKATIFRDFFEMWP 100
           GVAA+H+++LK + F D    WP
Sbjct: 114 GVAALHAKLLKGSAFIDRVRKWP 136


>SB_39896| Best HMM Match : DUF1018 (HMM E-Value=1.7)
          Length = 318

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 32  GVAAIHSEILKATIFRDFFEMWP 100
           GVAA+H+++LK + F D    WP
Sbjct: 114 GVAALHAKLLKGSAFIDRVRKWP 136


>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
          Length = 963

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -1

Query: 237 FSSFNFSKWTIQSSPILSQMRSDKPGLQRSNQRRGVMPLVLFWNLSGHISKKSRKIVAFK 58
           F+ +   +W   SSPI  +   D   L+ S++R+    LV+  N + H +  ++ +V  K
Sbjct: 481 FTFYARGRWCSGSSPITLKTHYDSIQLEISSRRKTDASLVMAVNFNQHFTSINKPVVKVK 540


>SB_8682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +1

Query: 466 HAEDCYDRWQSRSWILHRQTNYRFSLCSWKYCEQRPXRR*QVE 594
           H +  + +W+ R ++L + + Y F++CS+   +  P    Q++
Sbjct: 449 HGKTLWKKWKKRFFVLVQVSQYTFAMCSYMEKKSEPSDMMQLD 491


>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1916

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = -1

Query: 330 VSLSIRAASLSLF--SCFTFITARWKAGSLAQRFSSFNFS-KWTIQSSPILSQMRSDKPG 160
           VSLS+     S +  S F+++TA   A         F+F+       S + S +  D+P 
Sbjct: 750 VSLSVATTPCSSWTRSVFSWMTASISATDPIASLKPFSFATSCRTPPSSLNSCLGLDQPP 809

Query: 159 LQRSNQRRGVMPLVLFWN 106
           L R   R  V PL   WN
Sbjct: 810 LSRLRSRISVFPLRSDWN 827


>SB_47770| Best HMM Match : DUF973 (HMM E-Value=0.3)
          Length = 433

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
 Frame = -1

Query: 426 VITCKIFSN*RLYSWMRFTWTSNIDAGLILTPVSLSIRAASLSLFSCFTFITARWKAGSL 247
           + TC ++ +   Y W  F     I   + +T   L     +L L S FT I      GS 
Sbjct: 34  IATCAVYFSNARYVWFGFCVGFTIAPSICMTVSYLIKHMGTLGLRSTFTSIVCLICFGSS 93

Query: 246 AQRFSSF-----NFSK-WTIQSSPILSQMRSDKPGLQRSNQRRGVMPLV 118
             +   F     NFS+ W+ Q   ++  M S+K  ++  N    V  L+
Sbjct: 94  VLKLKLFWLCIRNFSEVWSRQGYMVM--MESEKRDIRSGNVYNFVEALI 140


>SB_37991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 84  FSKCGLINSKIRLTASLPGVGCSSATL 164
           F+ CG + +   + A +PG+GC++ TL
Sbjct: 2   FTICGSVPASNAVAALVPGLGCAATTL 28


>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
          Length = 505

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 177 RSDKPGLQRSNQRRGVMPLVLFWNLSGHISKKSRKI 70
           R+  PG  R   R G+MP  L W+    +S   R I
Sbjct: 229 RAGMPGANRGGSRHGLMPERLIWSYIIQLSSALRAI 264


>SB_28046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 439 HQARPQRVFHAEDCYDRWQSRSWILHR 519
           H  R   ++ AEDCY   +  SW +H+
Sbjct: 155 HTGRGMEIWRAEDCYMLKKISSWRVHK 181


>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
          Length = 2018

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 549 TAQAKAIICLAMKYPGAALPP-IITVLGVKDALG 451
           T QAKA+ CL +     AL P ++ +L  KDA G
Sbjct: 425 TKQAKALKCLRLLCDSKALAPFLLQLLSAKDANG 458


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,527,003
Number of Sequences: 59808
Number of extensions: 388186
Number of successful extensions: 897
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)