Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E17
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.3  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    23   3.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   4.4  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -3

Query: 589 LVTYVWVVVHSISNCTG*SD--NLFGDEVS 506
           LV  +W+V+  IS C+G  D   L+ D +S
Sbjct: 5   LVGIMWIVLVLISGCSGNPDAKRLYDDLLS 34


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 215 LEKLKELKRWAKDPAFQRAVMKVKQE 292
           LEKLKE + W  D   + +++K + E
Sbjct: 105 LEKLKERRIWRDDALTKLSLLKKRIE 130


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   ICRLSRCQWCSSHSLRNLKSHYFPRLFRN 93
           IC + +  + S +SLRN KS Y  +  +N
Sbjct: 34  ICNICKRVYSSLNSLRNHKSIYHRQHSKN 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,089
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)