Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_E17
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g29320.1 68416.m03682 glucan phosphorylase, putative similar ... 233 6e-62
At3g46970.1 68416.m05100 starch phosphorylase, putative similar ... 223 6e-59
At1g05280.1 68414.m00534 fringe-related protein Similar to hypot... 30 1.1
At3g59190.1 68416.m06599 F-box family protein contains F-box dom... 28 4.6
At2g38800.1 68415.m04764 calmodulin-binding protein-related cont... 28 4.6
At2g30470.1 68415.m03711 transcriptional factor B3 family protei... 28 6.1
At1g79430.2 68414.m09257 myb family transcription factor-related 28 6.1
At1g79430.1 68414.m09256 myb family transcription factor-related 28 6.1
At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containi... 27 8.0
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 27 8.0
>At3g29320.1 68416.m03682 glucan phosphorylase, putative similar to
alpha-glucan phosphorylase, L isozyme 1 precursor
GB:P04045 from [Solanum tuberosum] (J. Biochem. 106 (4),
691-695 (1989))
Length = 962
Score = 233 bits (571), Expect = 6e-62
Identities = 107/213 (50%), Positives = 152/213 (71%), Gaps = 5/213 (2%)
Frame = +2
Query: 11 VGSHAVNGVAAIHSEILKATIFRDFFEMWPDKFQNKTNGITPRRWLLLCNPGLSDLICDK 190
VG HAVNGVA IHSEI+K +F DF ++WP+KFQNKTNG+TPRRW+ CNP LSD+I +
Sbjct: 570 VGGHAVNGVAEIHSEIVKQDVFNDFVQLWPEKFQNKTNGVTPRRWIRFCNPYLSDIITNW 629
Query: 191 IG-EDWIVHLEKLKELKRWAKDPAFQRAVMKVKQENKLKLAALIERDTGVKINPASMFDV 367
IG EDW+++ EK+ EL+++A + Q K++NKLK+ +LI+ TG ++P +MFD+
Sbjct: 630 IGTEDWVLNTEKVAELRKFADNEDLQSEWRAAKKKNKLKVVSLIKERTGYTVSPDAMFDI 689
Query: 368 QVKRIHEYKRQLLNILHVITLYNRIKR----DPSASFTPRTVMIGGKAAPGYFIAKQIIA 535
Q+KRIHEYKRQLLNIL ++ Y ++K + +F PR + GGKA Y AK+I+
Sbjct: 690 QIKRIHEYKRQLLNILGIVYRYKKMKEMSASEREKAFVPRVCIFGGKAFATYVQAKRIVK 749
Query: 536 LACAVGNTVNNDPXVGDKLKLIFLXNYRVTLAE 634
V +T+N+DP +GD LK+IF+ +Y V++AE
Sbjct: 750 FITDVASTINHDPEIGDLLKVIFVPDYNVSVAE 782
>At3g46970.1 68416.m05100 starch phosphorylase, putative similar to
alpha-glucan phosphorylase, H isozyme SP:P32811 from
[Solanum tuberosum]
Length = 841
Score = 223 bits (546), Expect = 6e-59
Identities = 111/214 (51%), Positives = 145/214 (67%), Gaps = 4/214 (1%)
Frame = +2
Query: 11 VGSHAVNGVAAIHSEILKATIFRDFFEMWPDKFQNKTNGITPRRWLLLCNPGLSDLICDK 190
V SH VNGVA +HS+ILKA +F D+ +WP+KFQNKTNGITPRRWL C+P LSD+I
Sbjct: 450 VSSHTVNGVAQLHSDILKAELFADYVSIWPNKFQNKTNGITPRRWLRFCSPELSDIITKW 509
Query: 191 IGED-WIVHLEKLKELKRWAKDPAFQRAVMKVKQENKLKLAALIERDTGVKINPASMFDV 367
+ D WI L+ L L+++A + Q K NK +LA IER TGV I+P S+FD+
Sbjct: 510 LKTDKWITDLDLLTGLRQFADNEELQSEWASAKTANKKRLAQYIERVTGVSIDPTSLFDI 569
Query: 368 QVKRIHEYKRQLLNILHVITLYNRIKR---DPSASFTPRTVMIGGKAAPGYFIAKQIIAL 538
QVKRIHEYKRQL+NIL V+ + ++K + PRTVMIGGKA Y AK+I+ L
Sbjct: 570 QVKRIHEYKRQLMNILGVVYRFKKLKEMKPEERKKTVPRTVMIGGKAFATYTNAKRIVKL 629
Query: 539 ACAVGNTVNNDPXVGDKLKLIFLXNYRVTLAERI 640
VG+ VN+DP V + LK++F+ NY VT+AE +
Sbjct: 630 VNDVGDVVNSDPEVNEYLKVVFVPNYNVTVAEML 663
>At1g05280.1 68414.m00534 fringe-related protein Similar to
hypothetical protein PID|e327464 (gb|Z97338) various
hypothetical proteins from Arabidopsis thaliana strong
similarity to unknown protein (pir||T13026) similarity
to predicted proteins + similar to hypothetical protein
GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 461
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 403 TEYFARDHALQPHQARPQRVFHAEDCYDRWQS 498
T + A H Q P R+F CYDRW S
Sbjct: 308 TTFSAVRHLFSAVQLDPLRIFQLSVCYDRWYS 339
>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
Pfam:PF00646
Length = 388
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 296 KLKLAALIERDTGVKINPASMFDVQ--VKRIHEYKR 397
K+ +L+E G+++ P +FD + V R H YKR
Sbjct: 260 KVNFDSLVEASIGLRMTPDQVFDARDLVNRHHGYKR 295
>At2g38800.1 68415.m04764 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 612
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 215 LEKLKELKRWAKDPAFQRAVMKVKQENKLKLAALIE 322
+++ + + W D A QRAV K+ K K+A L+E
Sbjct: 551 IDERRNSEDWMFDYALQRAVSKLAPARKRKVALLVE 586
>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
low similarity to FUSCA3 [Arabidopsis thaliana]
GI:3582518; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 790
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 93 CGLINSKIRLTA-SLPGVGCSSATLAYLISSATRSEKIG 206
CG I SK+ + GVGCS+ + ++ TR E G
Sbjct: 74 CGCIASKVTIELMDYGGVGCSTCACCHQLNLNTRGENPG 112
>At1g79430.2 68414.m09257 myb family transcription factor-related
Length = 358
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 598 QLQLVTYVWVVVHSISNCTG*SDNLFGDEVSRSGFATDHNSPRR 467
Q+Q+ T+V + S+S L GDE + G + SPRR
Sbjct: 293 QIQMATHVSTDLDSLSEIYERKSGLSGDEGNNGGKLLERPSPRR 336
>At1g79430.1 68414.m09256 myb family transcription factor-related
Length = 293
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 598 QLQLVTYVWVVVHSISNCTG*SDNLFGDEVSRSGFATDHNSPRR 467
Q+Q+ T+V + S+S L GDE + G + SPRR
Sbjct: 228 QIQMATHVSTDLDSLSEIYERKSGLSGDEGNNGGKLLERPSPRR 271
>At1g13630.1 68414.m01601 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 764
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 360 NIDAGLILTPVSLSIRAASLSLFSCFTFITARWKAGSLAQRFSSFNFSK 214
NID GL+L LS S+ C ++ K G + + S FN K
Sbjct: 322 NIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMK 370
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 80 DFFEMWPDKFQNKTNGITPRRWLLLCN-PGLSDLICDKIGEDWIVHLEKLKELKRWAKDP 256
D+ E P FQN+ + + + W +C PG ++ C + +++HL + LK
Sbjct: 1841 DYVESDPAGFQNRVSTLF-KNWYQICELPGANETACSQ----YVLHLHQTGLLKGDDTTE 1895
Query: 257 AFQRAVMKV 283
+F R ++++
Sbjct: 1896 SFFRILLEL 1904
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,572,845
Number of Sequences: 28952
Number of extensions: 271141
Number of successful extensions: 815
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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