Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_E16
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 28 0.71
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 27 1.6
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||... 26 2.2
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 3.8
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 3.8
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 5.0
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 25 6.7
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 25 6.7
SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.7
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 24 8.8
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 24 8.8
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.9 bits (59), Expect = 0.71
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 100 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGT 246
V A +K+D +E S L TIE+L+ K E+ P K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176
>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 292
Score = 26.6 bits (56), Expect = 1.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 234 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLXSKYITPN 347
K W DGR+ RIL ++E R S ++ RSN +Y N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253
>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/75 (21%), Positives = 36/75 (48%)
Frame = -3
Query: 384 YSIMSRTLLHSIYLGLCT*IXKNYFSGFRCFRGLQIFIKFVEAVYHRAKVFLNSLRGQGG 205
Y + R +++ YL + + ++Y GF FR ++ ++ + + H+ ++ + + G G
Sbjct: 60 YDLEQRMIIYKDYLCIEK-LEEDYVPGFLSFREIKWYLPLLNHIPHQFRIDIILVDGNGV 118
Query: 204 FNFFPQFLNCFLRTL 160
+ L C L L
Sbjct: 119 LHPVGFGLACHLGVL 133
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 309 RSNFLXSKYITPNISNVIMFSTLLNKS 389
++ L ++ TPN SNV + ++L+N+S
Sbjct: 505 KNTILSNENNTPNYSNVCLSTSLINRS 531
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 130 KEDNSLNTLAESAKKTIEELREKVESAL 213
KE NS++ L+ S +KTIE R + S +
Sbjct: 371 KEKNSISELSPSLQKTIEWARVNLASTI 398
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.0 bits (52), Expect = 5.0
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 106 AFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEF 270
+ K + EDN AE ++T + ++++ +A ET K+F +D F +
Sbjct: 51 SLAKTEILHEDNPGLLEAEGLERTYKFRQDQLAPNVALETATKSFSLDLDKFGGY 105
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 127 PKEDNSLNTLAESAKKTIEELREKVESA 210
PKED +T+ E +K I EKV+ A
Sbjct: 65 PKEDALYSTIREEYQKAINIQNEKVQLA 92
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Frame = +1
Query: 112 VKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKK-------NFGTMVDSFNEF 270
+K+ P E ++ T E + E+ + ++ + + N+ + F+EF
Sbjct: 13 MKKKKPNESSNRITFTEDDSSSSEQEHAPIPNSFSSQITAASDASKDDNYDASIYGFDEF 72
Query: 271 YKNLKPAE 294
Y ++K AE
Sbjct: 73 YDSMKSAE 80
>SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 24.6 bits (51), Expect = 6.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 327 IXKNYFSGFRCFRGLQIFIKFVEAVYHRAKVFLNSLRGQGGFNFFPQFLN 178
+ N F+ ++ ++ + EAV R + + SLR Q NFF Q L+
Sbjct: 55 VQSNEFTESEDYKSIERSLAVTEAVMARFEKEMGSLRDQ--MNFFHQILD 102
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 8.8
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 109 FVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLK 285
FVK + SLN + +++ K +E +KV P K F V+ +Y NLK
Sbjct: 156 FVKLEEKHYSPSLNAMEQTSPKEEDEKSDKV-----PRVDKVCFTCGVNCSQTWYHNLK 209
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 24.2 bits (50), Expect = 8.8
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 166 AKKTIEELREKVESALAPETVK-KNFGTMVDSFNEFYKNL 282
A+K IEE E E A A E ++ +NF T V+ E +K L
Sbjct: 418 AEKAIEEAAE-AERAEADERLRLENFSTWVNEKRETHKIL 456
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,103
Number of Sequences: 5004
Number of extensions: 29183
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -