SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E14
         (656 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB779F Cluster: PREDICTED: hypothetical protein;...    74   3e-12
UniRef50_UPI00005A46D3 Cluster: PREDICTED: similar to RNA polyme...    73   8e-12
UniRef50_Q96BR3 Cluster: Polymerase (RNA) I polypeptide D, 16kDa...    73   8e-12
UniRef50_UPI0000F2CFCA Cluster: PREDICTED: similar to Polymerase...    69   1e-10
UniRef50_Q4S566 Cluster: Chromosome 6 SCAF14737, whole genome sh...    69   1e-10
UniRef50_UPI0000549CF6 Cluster: PREDICTED: hypothetical protein;...    60   5e-08
UniRef50_Q7PWJ8 Cluster: ENSANGP00000021954; n=1; Anopheles gamb...    45   0.002
UniRef50_Q0IFF8 Cluster: Putative uncharacterized protein; n=1; ...    45   0.002
UniRef50_A6SIZ9 Cluster: Putative uncharacterized protein; n=1; ...    37   0.37 
UniRef50_Q18TJ7 Cluster: Putative uncharacterized protein; n=2; ...    36   0.65 
UniRef50_Q8I514 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_Q22WH7 Cluster: HMG box family protein; n=1; Tetrahymen...    34   2.6  
UniRef50_A5Z7V4 Cluster: Putative uncharacterized protein; n=1; ...    33   4.6  
UniRef50_UPI000069EBBF Cluster: Splicing factor, arginine/serine...    33   6.0  
UniRef50_Q11S72 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_Q2PJ80 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_A7RKP2 Cluster: Predicted protein; n=1; Nematostella ve...    33   6.0  
UniRef50_Q5Y266 Cluster: BSP3p; n=2; Tremellomycetes|Rep: BSP3p ...    33   6.0  
UniRef50_UPI000150A222 Cluster: Cyclin, N-terminal domain contai...    33   8.0  

>UniRef50_UPI0000DB779F Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 390

 Score = 74.1 bits (174), Expect = 3e-12
 Identities = 39/67 (58%), Positives = 47/67 (70%)
 Frame = +2

Query: 197 DEALXKLAVEXLIREAVQGAARAEIVGPSGWVKAPPQKTNKRFLVNTIRNAXGSNKYHFK 376
           DE L +LAVE L+ EA  GA RAEI+GPSGW+K P +  NKRFL +T+RN   SNKY  K
Sbjct: 3   DETLNRLAVEALLEEAKLGAKRAEIMGPSGWIK-PKECINKRFLHSTLRNVVLSNKYQLK 61

Query: 377 SHRRSHK 397
             R+S K
Sbjct: 62  --RKSEK 66


>UniRef50_UPI00005A46D3 Cluster: PREDICTED: similar to RNA
           polymerase 1-3 isoform 2; n=1; Canis lupus
           familiaris|Rep: PREDICTED: similar to RNA polymerase 1-3
           isoform 2 - Canis familiaris
          Length = 329

 Score = 72.5 bits (170), Expect = 8e-12
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
 Frame = +2

Query: 176 PENVPIX--DEALXKLAVEXLIREAVQGAARAEIVGPSGWVKAPPQKTNKRFLVNTIRNA 349
           PE VP    D+ L + A+E L++EA +G  RAE +GP GW+K P   TNKRFL+NTI+N 
Sbjct: 202 PEAVPAMEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLAGTNKRFLINTIKNT 261

Query: 350 XGSNKYHFKSHRRSHKSPTRERRSESSIHK 439
             S+K      +   K  T+ +  +    K
Sbjct: 262 LPSHKEQDPEQKEGSKEATKSQGQKEEKRK 291


>UniRef50_Q96BR3 Cluster: Polymerase (RNA) I polypeptide D, 16kDa;
           n=13; Tetrapoda|Rep: Polymerase (RNA) I polypeptide D,
           16kDa - Homo sapiens (Human)
          Length = 122

 Score = 72.5 bits (170), Expect = 8e-12
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = +2

Query: 197 DEALXKLAVEXLIREAVQGAARAEIVGPSGWVKAPPQKTNKRFLVNTIRNAXGSNKYHFK 376
           D+ L + A+E L++EA +G  RAE +GP GW+K P   TNKRFL+NTI+N   S+K    
Sbjct: 4   DQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKEQDH 63

Query: 377 SHRRSHKSPTR-ERRSESSIHKDKS 448
             +   K P + + + E +  K +S
Sbjct: 64  EQKEGDKEPAKSQAQKEENPKKHRS 88


>UniRef50_UPI0000F2CFCA Cluster: PREDICTED: similar to Polymerase
           (RNA) I polypeptide D, 16kDa; n=1; Monodelphis
           domestica|Rep: PREDICTED: similar to Polymerase (RNA) I
           polypeptide D, 16kDa - Monodelphis domestica
          Length = 330

 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = +2

Query: 203 ALXKLAVEXLIREAVQGAARAEIVGPSGWVKAPPQKTNKRFLVNTIRNAXGSNKYHFKSH 382
           AL   A+E L++EA +G  RAE +GP GW+K P   TNKRFL+NTI+N   S K   +  
Sbjct: 214 ALAGKAIEELLKEAKRGKTRAETMGPMGWMKCPLAGTNKRFLLNTIKNTLPSQKEQDQEQ 273

Query: 383 RRSHKSP-TRERRSESSIHKDKS 448
           +  +K P   + R E +  K ++
Sbjct: 274 KEDNKEPEPSQNRKEENPKKHRT 296


>UniRef50_Q4S566 Cluster: Chromosome 6 SCAF14737, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 6
           SCAF14737, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 145

 Score = 68.5 bits (160), Expect = 1e-10
 Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
 Frame = +2

Query: 197 DEALXKLAVEXLIREAVQGAARAEIVGPSGWVKAPPQKTNKRFLVNTIRNAXGSNKYHFK 376
           D  L K A+E L+RE  +   RAE +GP+GW+K P Q TNKRFL+NT+R+A G  K    
Sbjct: 4   DNELEKRAIEELLRETDRARLRAETMGPTGWLKCPLQSTNKRFLLNTLRSA-GPQK--LP 60

Query: 377 SHRRSHKSPTRER-RSESSIHKDKS 448
           + R+   + TR R RS+S   K  S
Sbjct: 61  AERQDAAAATRRRSRSKSGDRKGDS 85


>UniRef50_UPI0000549CF6 Cluster: PREDICTED: hypothetical protein;
           n=2; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 157

 Score = 60.1 bits (139), Expect = 5e-08
 Identities = 26/51 (50%), Positives = 37/51 (72%)
 Frame = +2

Query: 197 DEALXKLAVEXLIREAVQGAARAEIVGPSGWVKAPPQKTNKRFLVNTIRNA 349
           D  L + AVE L++EA +  AR E +GP+GW+K P   TNKRFL+NT+R++
Sbjct: 3   DSELERKAVEELLKEANRAKARVETMGPAGWMKCPLGSTNKRFLLNTLRSS 53


>UniRef50_Q7PWJ8 Cluster: ENSANGP00000021954; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000021954 - Anopheles gambiae
           str. PEST
          Length = 191

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
 Frame = +2

Query: 200 EALXKLAVEXLIREAVQGAARAEIVGPSGWVKAPPQKTNKRFLVNTIRNAXGSNK--YHF 373
           + L   AVE ++RE   G  RAE  G + W   P +KTNKRFL  T+ +    N      
Sbjct: 78  DQLTSRAVEEILRETRLGKMRAEERGSTAWRPCPLRKTNKRFLNRTLESMVKHNARVKQN 137

Query: 374 KSHR---------RSHKSPTRERRSESSIHKDKSKRKR 460
            +HR         R     TRER S+ +  K + + K+
Sbjct: 138 TTHRSLLKLTELVRKGNEDTRERSSKQTKEKKRDRSKK 175


>UniRef50_Q0IFF8 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 254

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 24/58 (41%), Positives = 31/58 (53%)
 Frame = +2

Query: 191 IXDEALXKLAVEXLIREAVQGAARAEIVGPSGWVKAPPQKTNKRFLVNTIRNAXGSNK 364
           I  + L   AVE + R+A  G  RA  VG  GW   P +KTNKRFL  T+ +    N+
Sbjct: 102 ISCDQLTNKAVEEIYRDAKIGRIRASQVGALGWRGCPLKKTNKRFLNRTMNSVMQHNR 159


>UniRef50_A6SIZ9 Cluster: Putative uncharacterized protein; n=1;
            Botryotinia fuckeliana B05.10|Rep: Putative
            uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 1024

 Score = 37.1 bits (82), Expect = 0.37
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +2

Query: 155  KEDVDNKPENV-PIXDEALXKLAVEXLIREAVQGAARAEIVGPSGWVKAPPQKTNKRFLV 331
            +E V N   N+ PI D    K +    I        R EIV P  +  +PP K N  +  
Sbjct: 807  REPVANSTYNLNPILDSKSTKRSGPRNITTPSTHEPRLEIVSPDLYSASPPSKINSPYQS 866

Query: 332  NTIRNAXGSNKY-HFKSH 382
            NT+     +NK+ HF  H
Sbjct: 867  NTLNITNHANKHSHFPQH 884


>UniRef50_Q18TJ7 Cluster: Putative uncharacterized protein; n=2;
           Desulfitobacterium hafniense|Rep: Putative
           uncharacterized protein - Desulfitobacterium hafniense
           (strain DCB-2)
          Length = 450

 Score = 36.3 bits (80), Expect = 0.65
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +2

Query: 212 KLAVEXLIREAVQGAAR--AEIVGPSGWVKAPPQKTNKRFLVNTIRNAXGSNKYHFKSHR 385
           KL +E +  +  QG  +   E  G S W     +K N++      RN+ G+ K    S++
Sbjct: 256 KLIIEAMSNKTNQGEGKDKKEGYGKSKWYNLDREKNNQKSTKEQPRNSIGNPKPSQDSNK 315

Query: 386 RSHKSPTRERRSESSIHKDKSK 451
            S+K   +    + S  KDK +
Sbjct: 316 SSNKDDNKNSNKDRSKDKDKDR 337


>UniRef50_Q8I514 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 420

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 359 NKYHFKSHRRSHKSPTRERRSESSIHKDKSK 451
           N+YH+K+H    KS  R +R+ S ++KD ++
Sbjct: 172 NEYHYKTHNNGKKSEVRIKRTNSHLNKDSNR 202


>UniRef50_Q22WH7 Cluster: HMG box family protein; n=1; Tetrahymena
           thermophila SB210|Rep: HMG box family protein -
           Tetrahymena thermophila SB210
          Length = 691

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +2

Query: 284 GWVKAPPQKTNKRFLVNTIRNAXGSNKYHFKSHRRSHKSPTRERRSESSIHKDKSKRKR 460
           G V   P+K+NK    NT RN+  S     KS  R++ S  R+  S+S   +++S++KR
Sbjct: 287 GKVVKMPRKSNKMEAENTSRNSSKS-----KSRGRNNSSKKRQSNSKSKTRQEQSQKKR 340


>UniRef50_A5Z7V4 Cluster: Putative uncharacterized protein; n=1;
           Eubacterium ventriosum ATCC 27560|Rep: Putative
           uncharacterized protein - Eubacterium ventriosum ATCC
           27560
          Length = 201

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
 Frame = -2

Query: 376 LKMIFIGSXCISYGIHQKTFVGF-----------LRRGFNPT*RTNDFSSSGALNSFTYQ 230
           L ++ IGS   +YGI    + GF           + R F+ +  T  F  +  +  F   
Sbjct: 12  LAILVIGSIIAAYGITLALYAGFGGATLAVLWQGIARTFHISIGTASFVVALGMILFALI 71

Query: 229 XFNSQLX*GFVXYRNIFRFIVDIFFICHNFYTNYSFI 119
              SQ+  G V Y+ ++   VD+F  CH  Y+ Y +I
Sbjct: 72  YDKSQIHIGTVLYQIVYSICVDLFANCH-IYSTYKWI 107


>UniRef50_UPI000069EBBF Cluster: Splicing factor,
           arginine/serine-rich 12 (Serine-arginine-rich- splicing
           regulatory protein 86) (SRrp86) (Splicing regulatory
           protein 508) (SRrp508).; n=2; Tetrapoda|Rep: Splicing
           factor, arginine/serine-rich 12 (Serine-arginine-rich-
           splicing regulatory protein 86) (SRrp86) (Splicing
           regulatory protein 508) (SRrp508). - Xenopus tropicalis
          Length = 500

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
 Frame = +2

Query: 137 IKIMTDKEDVDNKPENVPIXDEALXKLAVEXL--IREA---VQGAARAEIVGPSGWVKAP 301
           +KI      +   PE  P   +A  K   E +  +REA   +  A   E   P   +K  
Sbjct: 134 LKINHSNNAIVKPPEMTP---QAAAKELEEVMKRVREAQSFISAAIEPETGKPVEKIKQE 190

Query: 302 PQKTNKRFLVNT-IRNAXGSNKYHFKSHRRSH-KSPTRERRSESSIHKDKSKRK 457
             KT  R    +  R     +K  ++SH R+  +S  +ERR   S HK +SK K
Sbjct: 191 HSKTRSRSRSKSRSRRKRSRSKNSYRSHSRNRSRSRHKERRRSKSPHKKRSKSK 244


>UniRef50_Q11S72 Cluster: Putative uncharacterized protein; n=1;
           Cytophaga hutchinsonii ATCC 33406|Rep: Putative
           uncharacterized protein - Cytophaga hutchinsonii (strain
           ATCC 33406 / NCIMB 9469)
          Length = 341

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = -2

Query: 334 IHQKTFVGFLRRGFNPT*RTNDFSSSGALNSFTY 233
           IH  T+V FL+  FN   R  DF++SGA NS+TY
Sbjct: 272 IHN-TYVSFLKNTFNT--RYIDFTASGAWNSYTY 302


>UniRef50_Q2PJ80 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 108

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 218 AVEXLIREAVQGAARAEIVGPSGWVKAPPQKTNKRFLVNTIRN 346
           A + ++ EA +   RA+ +GP G++K     TNK FL  TI +
Sbjct: 55  AKKAILFEAKRAKERADEMGPQGYLKPKSLGTNKEFLRRTIES 97


>UniRef50_A7RKP2 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 124

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +2

Query: 314 NKRFLVNTIRNAXGSNKYHFKSHRRSHKSPTRERRSESSIHKDKSKRKR 460
           +KR LV  ++NA  + + H K H+ S +    +++++ +  ++K  +KR
Sbjct: 43  HKRKLVTRMKNARNAKREHLKRHKNSKRGKLHKKQAKVNQKRNKGHQKR 91


>UniRef50_Q5Y266 Cluster: BSP3p; n=2; Tremellomycetes|Rep: BSP3p -
           Cryptococcus gattii (Filobasidiella gattii)
           (Cryptococcusbacillisporus)
          Length = 391

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 278 PSGWVKAPPQKTNKRFLVNTIRNAXGSNKYHFKSHRRSHKSPTRERRSESSIHK 439
           P  W+       + RF +NT+ NA  S   +F S   SH  PTR   S + I K
Sbjct: 291 PGTWIGVEVDNPD-RFGINTLDNAVISGMQYFASSTLSHARPTRTDGSSNRISK 343


>UniRef50_UPI000150A222 Cluster: Cyclin, N-terminal domain
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: Cyclin, N-terminal domain containing protein
           - Tetrahymena thermophila SB210
          Length = 910

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 341 RNAXGSNKYHFKSHRRSHKSPTRERRSESSIHKDKSKRKR 460
           RN     K   K H   H S +R+RR  S+ HKDK KR +
Sbjct: 488 RNRNRDRKDKDKKHSSRH-SRSRDRRDRSNSHKDKKKRSK 526


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,097,131
Number of Sequences: 1657284
Number of extensions: 8914587
Number of successful extensions: 22586
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 21563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22539
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -