Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E14
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    29   0.45 
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   5.5  
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    25   7.3  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   7.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   7.3  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    25   7.3  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   9.6  

>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 636 PPKXNVHYTHKFPNKILNXFLTVXFXWLEGVFCQLVSSLFHYNQIYF 496
           PP  NV Y   +  K LN + +    W  G   Q+V   FHYN++ +
Sbjct: 88  PPDPNVSY-RDWILKSLNKYYSNFLYWWYGA--QIVQKRFHYNELQY 131


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 402 QQERDVLNLLFTKISQKEN--VKMXSYDIQQV 491
           +QE+++L LL  K+  KEN      SY I Q+
Sbjct: 225 EQEQNLLKLLINKLGDKENKIASKASYSILQL 256


>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 193 YRNIFRFIVDIFFICHNFYTNYS 125
           +RN F FI D+F++  +F   YS
Sbjct: 37  HRNTFAFICDVFWLKLSFTLRYS 59


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 222 LXN*YVK-LFKAPLELKSLVRQVGLKPLLKKPT 317
           L N Y+K  F  PLE++  +    +K  LKKPT
Sbjct: 465 LLNDYLKGFFDEPLEIQLTLLTAVIKVFLKKPT 497


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 410  LLLETYESGGGS*NDIYWILXHFLWYSPENVCWFFE 303
            L+ E  E G  S NDIY+   HF     E+VC  FE
Sbjct: 943  LIREQRERGKLSGNDIYYTARHF-----EHVCPMFE 973


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = +2

Query: 221 VEXLIREAVQGAARAEIVGPSGWVKAPPQK-TNKRFLVNTIRNAXGSNKYHFKSHRRSHK 397
           +E L RE    + + +   P+G   +  +  +NK    +  R   GSN  H  S+  +  
Sbjct: 208 LESLRREGYLNSNKKQSQSPNGDYNSSDESCSNKTVASSQRRGTPGSNNVHTASNNETPD 267

Query: 398 SPTRERRSESSIHKDKSKRKR 460
              R     + I   K ++K+
Sbjct: 268 MKRRRFLERNRIAASKCRQKK 288


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 308 KTNKRFLVNTIRNAXGSNKYHFKSHRRSHKSPTRERRSESSIHKDKSKRKR 460
           K N + + N+   +   NK         HKS    +  +SS+ K K+ RKR
Sbjct: 18  KKNSKVVENSSARSL-KNKTEENKTIDKHKSSVGPKEPKSSLEKPKANRKR 67


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 299 PPQKTNKRFLVNTIRNAXGSNKYHFKSHRRSHKSPTRERRSESSIHKDKS 448
           P +K+    L  +I    G +    +  +R+H  P RE+R  + I + K+
Sbjct: 3   PIKKSRSLKLPKSILEEIGESDSSARRGKRNHNLPHREKRKFARISRGKN 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,331
Number of Sequences: 5004
Number of extensions: 40308
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)