Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E14
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_9858| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_15902| Best HMM Match : AMOP (HMM E-Value=3.5e-13)                  29   4.4  

>SB_45179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 317 KRFLVNTIRNAXGSNKYHFKSHRRSHKSPTRERRSESSIHKDKSKRKR 460
           K+ L    ++  GS     +S  +  +S T+ RRSE+   + ++KR+R
Sbjct: 223 KQSLKEAKQSFEGSETKRRRSETKRRRSETKRRRSETKRRRSETKRRR 270


>SB_9858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
 Frame = -1

Query: 581 YF*QXYXFG*KGYFVSWFPVCFITIKYIFXNLLYI---ITXHFNVFFLT--YLCE*KIQN 417
           Y+   Y F  +G F     VC +T+ ++   +L +   I   FN  +LT  Y+   K  N
Sbjct: 115 YYAVLYPFSARGRFTKERIVCAVTLCWVLGAVLILPETIALKFNTKYLTCVYVWTSKDMN 174

Query: 416 -VSLLLETYESGGGS*NDI---YWILXHFLWYSPENVCWFF 306
             S ++    +G      +   Y  +   LW+S +N CW F
Sbjct: 175 RASTIIWPLAAGVIPFTILAFLYGKVIRTLWFSRQNQCWDF 215


>SB_15902| Best HMM Match : AMOP (HMM E-Value=3.5e-13)
          Length = 609

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 374 KSHRRSHKSPTRERRSESSIHKDKSKRKR 460
           K HRR  K  TR++  ++  HK  S R R
Sbjct: 164 KKHRRCRKFQTRKKNMKNGAHKSSSLRAR 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,002,933
Number of Sequences: 59808
Number of extensions: 264371
Number of successful extensions: 874
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)