Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E14
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03510.1 68416.m00349 phototropic-responsive NPH3 family prot...    28   4.8  
At5g12230.1 68418.m01435 expressed protein                             28   6.3  

>At3g03510.1 68416.m00349 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 455

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 553 RRGILSAGFQFVSLQSNIFFXTC 485
           +RG +S+GF F SL+ +IF   C
Sbjct: 174 QRGTISSGFLFKSLKESIFLGAC 196


>At5g12230.1 68418.m01435 expressed protein 
          Length = 221

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +2

Query: 290 VKAPPQKTNKRFLVNTIRNAXGSNKYHFKSHRRSHKSPTRERRSESSIHKDKSKRK 457
           V+ PP +     + +  ++         K H+   K   RE +     HKD+SK K
Sbjct: 102 VELPPAEKGAPTIPSKSKSESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDK 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,389,165
Number of Sequences: 28952
Number of extensions: 192805
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)