Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E12
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27370.1 68417.m03929 myosin family protein contains Pfam pro...    31   0.46 
At4g15840.1 68417.m02409 expressed protein                             29   1.4  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   5.6  
At5g07790.1 68418.m00892 expressed protein                             27   7.4  
At4g16141.1 68417.m02446 expressed protein contains 1 predicted ...    27   7.4  
At2g26860.1 68415.m03222 F-box family protein contains F-box dom...    27   7.4  

>At4g27370.1 68417.m03929 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF00612 IQ
           calmodulin-binding motif
          Length = 1126

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 81  LNFLNQHSSFYTCAIARREQKLKEH-GASSCISGKRGR 191
           ++ LN+ S+F          KLK+H  A+SC  G+RGR
Sbjct: 590 VSLLNEESNFPKATDTTFANKLKQHLNANSCFKGERGR 627


>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 231 ISGSRARFQLSGNSGRKHSRCCTSILRKFSG 323
           +SGS   FQ S NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 141 KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 239
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 162 SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 305
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


>At4g16141.1 68417.m02446 expressed protein contains 1 predicted
           transmembrane domain; contains a partial Pfam PF00320:
           GATA zinc finger profile
          Length = 226

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 437 KTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDT 333
           K E     SDV+NG C +S  G G T    V+C T
Sbjct: 11  KLESAGDSSDVDNGNCSSSGSG-GDTKKTCVDCGT 44


>At2g26860.1 68415.m03222 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 405

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 3   GRTRNPSKRNTSTFILKRILVLKSRTLNFLN 95
           G TR P +R+  +FILK    LKS +++ L+
Sbjct: 370 GYTRRPEERDFVSFILKHACHLKSSSISRLS 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,783,461
Number of Sequences: 28952
Number of extensions: 179718
Number of successful extensions: 403
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)