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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E08
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    63   1e-11
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    63   1e-11
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    26   1.4  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   1.4  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   1.8  
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    25   2.4  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   3.2  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   4.3  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    24   7.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   7.5  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    23   9.8  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 63.3 bits (147), Expect = 1e-11
 Identities = 28/47 (59%), Positives = 37/47 (78%)
 Frame = +3

Query: 123 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGILYQ 263
           L F TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGI ++
Sbjct: 26  LDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFK 72



 Score = 35.1 bits (77), Expect = 0.003
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +1

Query: 256 SIKLXEXERERRDNYVPXVSALE 324
           S KL E ERER+D YVP VS LE
Sbjct: 70  SFKLQEEERERKDQYVPEVSELE 92


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 63.3 bits (147), Expect = 1e-11
 Identities = 28/47 (59%), Positives = 37/47 (78%)
 Frame = +3

Query: 123 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGILYQ 263
           L F TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGI ++
Sbjct: 26  LDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFK 72



 Score = 35.1 bits (77), Expect = 0.003
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +1

Query: 256 SIKLXEXERERRDNYVPXVSALE 324
           S KL E ERER+D YVP VS LE
Sbjct: 70  SFKLQEEERERKDQYVPEVSELE 92


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 156 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGILYQ 263
           EIA++ TKP  + I G       RL  S++R  L Q
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIRDYLDQ 244


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 202 PAILFLRGLVGMIAISSHILLFVSKVK 122
           P I  LRGLV   A   H+L F++K++
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNKLE 483


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 226 VSDTRKCEESSIKLXEXERERRDNYVPXVSALET 327
           VSDTR   E   K  E ++E  DNY     ALE+
Sbjct: 833 VSDTRLRLERMHKFIEKDQESIDNYEQNREALES 866


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 306 WDIVVTPLTLLFXKFDRGFLALASV*DASLN 214
           WD+++   T     +DRG+ +L  V D S N
Sbjct: 181 WDLLLETNTKYCSLYDRGYTSLGGVSDTSPN 211


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 57  GHDPWLKLYSAAFDK 13
           G D WLKL+ +AF K
Sbjct: 146 GDDTWLKLFPSAFSK 160


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 226 VSDTRKCEESSIKLXEXERERRDNYV 303
           VSD ++C +  I+    ER+ RD Y+
Sbjct: 739 VSDIKQCIDMLIEKEYLERQGRDEYI 764


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 54  HDPWLKLYSAAFDKNQ 7
           H PWLK+ +  F KNQ
Sbjct: 841 HIPWLKMPNFDFKKNQ 856


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 171 PTKPLRNKIAGFATHLMRRLRHS 239
           P + +RNK    A H+M RL ++
Sbjct: 43  PHESVRNKTISIANHIMTRLNNN 65


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 130 LIQIKEYVKKSLSFLPSLLGIKLLD 204
           +I++K+ + KSL F   + G+KL+D
Sbjct: 16  MIRVKD-LDKSLKFYTEVFGMKLID 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,586
Number of Sequences: 5004
Number of extensions: 22413
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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