Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_E08
(343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 63 1e-11
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 63 1e-11
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 26 1.4
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 26 1.4
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 1.8
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 25 2.4
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 3.2
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 4.3
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 24 7.5
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 24 7.5
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc... 23 9.8
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 63.3 bits (147), Expect = 1e-11
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = +3
Query: 123 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGILYQ 263
L F TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGI ++
Sbjct: 26 LDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFK 72
Score = 35.1 bits (77), Expect = 0.003
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +1
Query: 256 SIKLXEXERERRDNYVPXVSALE 324
S KL E ERER+D YVP VS LE
Sbjct: 70 SFKLQEEERERKDQYVPEVSELE 92
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 63.3 bits (147), Expect = 1e-11
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = +3
Query: 123 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGILYQ 263
L F TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGI ++
Sbjct: 26 LDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFK 72
Score = 35.1 bits (77), Expect = 0.003
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +1
Query: 256 SIKLXEXERERRDNYVPXVSALE 324
S KL E ERER+D YVP VS LE
Sbjct: 70 SFKLQEEERERKDQYVPEVSELE 92
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 1.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 156 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGILYQ 263
EIA++ TKP + I G RL S++R L Q
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIRDYLDQ 244
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 26.2 bits (55), Expect = 1.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 202 PAILFLRGLVGMIAISSHILLFVSKVK 122
P I LRGLV A H+L F++K++
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNKLE 483
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 1.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 226 VSDTRKCEESSIKLXEXERERRDNYVPXVSALET 327
VSDTR E K E ++E DNY ALE+
Sbjct: 833 VSDTRLRLERMHKFIEKDQESIDNYEQNREALES 866
>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 265
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 306 WDIVVTPLTLLFXKFDRGFLALASV*DASLN 214
WD+++ T +DRG+ +L V D S N
Sbjct: 181 WDLLLETNTKYCSLYDRGYTSLGGVSDTSPN 211
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 3.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 57 GHDPWLKLYSAAFDK 13
G D WLKL+ +AF K
Sbjct: 146 GDDTWLKLFPSAFSK 160
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 24.6 bits (51), Expect = 4.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 226 VSDTRKCEESSIKLXEXERERRDNYV 303
VSD ++C + I+ ER+ RD Y+
Sbjct: 739 VSDIKQCIDMLIEKEYLERQGRDEYI 764
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 54 HDPWLKLYSAAFDKNQ 7
H PWLK+ + F KNQ
Sbjct: 841 HIPWLKMPNFDFKKNQ 856
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 171 PTKPLRNKIAGFATHLMRRLRHS 239
P + +RNK A H+M RL ++
Sbjct: 43 PHESVRNKTISIANHIMTRLNNN 65
>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 302
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 130 LIQIKEYVKKSLSFLPSLLGIKLLD 204
+I++K+ + KSL F + G+KL+D
Sbjct: 16 MIRVKD-LDKSLKFYTEVFGMKLID 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,586
Number of Sequences: 5004
Number of extensions: 22413
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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