Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E08
         (343 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                             65   1e-11
10_07_0174 + 13815478-13815903                                         65   2e-11

>03_01_0066 - 537729-538163
          Length = 144

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 27/44 (61%), Positives = 37/44 (84%)
 Frame = +3

Query: 123 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGI 254
           L F TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGI
Sbjct: 26  LDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGI 69



 Score = 35.5 bits (78), Expect = 0.011
 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +1

Query: 58  RTKTVXXXXXXXXEKYYTTINT*LLIQIKEYVKKSLSFLPSL-LGIKLLDLP-HI**GVS 231
           RTKTV        EKYY+ +   L     + V + +S LPS  L  K+     H+   + 
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMT--LDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQ 62

Query: 232 DTRKCEESSIKLXEXERERRDNYVPXVSALE 324
                   S+KL E ERERR ++VP  SALE
Sbjct: 63  -RGPVRGISLKLQEEERERRMDFVPDRSALE 92


>10_07_0174 + 13815478-13815903
          Length = 141

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 27/44 (61%), Positives = 36/44 (81%)
 Frame = +3

Query: 123 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGI 254
           L F TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGI
Sbjct: 26  LDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGI 69



 Score = 35.9 bits (79), Expect = 0.008
 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +1

Query: 58  RTKTVXXXXXXXXEKYYTTINT*LLIQIKEYVKKSLSFLPSL-LGIKLLDLP-HI**GVS 231
           RTKTV        EKYY+ +   L     + V + +S LPS  L  K+     H+   + 
Sbjct: 5   RTKTVKKTSRQVIEKYYSRMT--LDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQ 62

Query: 232 DTRKCEESSIKLXEXERERRDNYVPXVSALE 324
                   S+KL E ERERR ++VP  SALE
Sbjct: 63  -RGPVRGISLKLQEEERERRMDFVPEKSALE 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,779,562
Number of Sequences: 37544
Number of extensions: 125272
Number of successful extensions: 261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)